Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 703 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 663 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 491 / 2e-160 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 475 / 2e-154 NLP5 Plant regulator RWP-RK family protein (.1) AT1G64530 376 / 1e-116 NLP6 Plant regulator RWP-RK family protein (.1) AT3G59580 323 / 4e-96 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 311 / 2e-91 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G24020 284 / 1e-81 NLP7 NIN like protein 7 (.1) AT4G38340 280 / 1e-81 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35590 52 / 8e-07 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166400 [exp] 1600 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 1405 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 853 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 841 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 651 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 636 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 392 / 5e-121 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 380 / 1e-116 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 350 / 2e-105 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012257 [exp] 574 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 572 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 558 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10016018 [exp] 408 / 4e-128 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 372 / 1e-113 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 347 / 4e-106 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 344 / 1e-103 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 344 / 1e-103 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 331 / 5e-101 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 328 / 7e-100 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.009G166666.1 pacid=42771274 polypeptide=Potri.009G166666.1.p locus=Potri.009G166666 ID=Potri.009G166666.1.v4.1 annot-version=v4.1 ATGGATGACCACCGTTCCTCGACCCCTAATTCTACATTCGAAACTTTCTCAGGAAATGTCACGAACTGGGATTTCATGGATGAAATCTTGTATCAAGGGT GGTTTGAGAAGGATGGAGGGTTCAACTTTCTGCAGCAAGGTCGTCTCTCCACCTCTAATGTTCTGCATGACCCTTCACTATATATTCCCGTTACGGGGAC TCCTAATTGGAGTACAGCCTCAAACCAGCAGGACTATCAAGAAGAAACAGAAAGGCATTGCCATGGAAATCCACCACTAGATTATTCAAACAGCACGGAT CTTGTTCAGACTGAACTTCAGGTTGAAGATTCTGTGGAGACTTCCACACCTTTCGCGCACCCCGCAAGCTGTCGAGTAGAAGCTGCTGGATTGGGTTGCG AATGGCAGATGGTGCAGAGAGTAAATCCAGGGACTTCATGTTCTGTGAAGGAGAGAGTACTGCAAGCCGTTGGATACTTAAAAAATTGTATACAAGATAG AGATATTCTTATCCAGATTTGGCTACCCATGGAGAAAGAAGGGAAAAGAGTACTTGCTACTATTGATCAGCCATACTTTGTTGATCCGAGTTGCAAGAGT CTTGCAAGTTATAGAAAGGTTTCAACAGCCTATCATTTCCAAGCAGAAGAGGATGCAAAATGTTCTGTAGGGTTCCCCGGCCGGGTTTTCTTGGAAAAGC TGCCTGAGTGGACTCCTGACGTACGTCTCTTCAGAAGAGAAGAATATCCACATAAAGATCATGCAGTACAACATAACATTAGAGGGTCTCTTGCACTCCC ACTTTTCAAACAAGGCAGTGAGACTTGCTTGGGCATAGTTGAGATTGCGACTACCATTCAGAAGATAAGCTATCGTCCAGAACTACAAGACATCTGCAAA GTTCTCCAGGCTGTTGATCTAAGAAGTTCTGAAGACTTCTGCTCTCCTGGTGTCGAGACTTGCAATCGATTAAATCGAGCTGCGGTGCCTGAGATTTCAG ATATTGTGAAATCTGTTTGCAAGACATATAGGTTGCCCTTGGCTCTAACATGGGCCTTATGTAGCCGGCAAGGTAAAAGTGGACGCCAGCAGTTTCCCGA AAGGTTTAGCTCTTGTATTTCCACTGTGGATTCTGCTTGCTTTTTAGCCGACAGAGGTTTTTCAGGTTTTCACATGGCGAGTTTTGAGCAATACCTTTTC CTCGGTCAAGGGATTGTGGGGAGAGCATTCACAACACAAAAGCAATGTTTCACGAATGATATAACTTCCTTCAGCAAGAAAGATTATCCTCTAGCTCACC ATGCTAAGATATTTGGTCTTCATGCTGCCATAGCGATTCCCCTGAGAAGCATTTCTACTGGATTGGTTGAATTTGTGTTGGAGTTTTTCTTGCCAAAAGA TTGCCAAGATACCGAAGAGCAAAAGGAGATGTGGGATTTATTGCCTATTTCCATAAAACAGGTTTGCTGGAGTTTACAAGTTGTCATGGACAAGGAGCTT GATCAAGGAGAAAATCAGAGTTTTGTATCATCACCTTCTAAAGAACCACCACGGGATGAATCATCTTGGATTGCCTGGATGGTGGAGGCCCAAAAGAAGG GTAAAAGTTGCTGCATCACGTGGGACTATCCAAAAGAACCTAAAGAAGAGTTCAAGATGATAACTCCCTGGGATGACTCCGAGGAGGAATTAGACAATAA GCAAGTAATTTCAGAGTTGGGTCAACTTCAGCAAAATCCTAGACCTAATAGCTGTATCGAGGGTGATGGAGTTTCTTCTGCTTTTGGCGGATGTCGCTCA TTAGGCAGCAGGAAAACAGGTAAGAAGAGACGGACCAAGACAGCGATCCAGACAATCAGCTTGGAAGTTCTTCGACGATACTTTGCAGGGAGCCTCAAAG ATGCTTCTCAAAGCCTCGGTGTTTGCTCTACTACTCTAAAACGGATATGCAGACAACACGGTATCAAACGATGGCCTTCTCGAAAGATCAACAAGGTTGG CCATTCCTTACGAAAACTCCAGCAGGTGATCGACACAGTCCAAGGTGCTAAGGGTGCCGTTCAAATTGAATCTTTCTATTCAGCCTTCCCAGAACTGAGC TCTCCAAAAATTTCAAGTCATGCTCCTTATTCATCATTGAGGAGCGACAATTCAAAGCACTTAGACTCTCCACCTGATGATTCTAGCCCTTCTGGCACTG CTTCAAAATCCCATTCCTCTCCGTGTAGTGGGAAGTCTTGCTCAAGTAACTGCTGTTCTGCTCGAGCACAACAGCATGATGCCACCACTATAACTGTCTC AAGCAATGGAAATGGCGCTTTACTTGCAGAAACATCGAATGGGATTTTAAAGAGGACTTGCAGTAGTGAATTAGCAGAATTTCATTCAATGAATAACCAT GGAGATCCAGACTTTCTTGTAAGATCACAAATTCACAAAACAAGGACAGTCAGTGGGCATATACATCAAAGTGAGTTAGGAAGTCCACGTTTTGCCCAGA GTTTACGAGAAGGAGGTGTCTTCGGAGTTAAAGCCATTTTTGGTGTAGAAAAGGTTAGGTTAGGCTTGCAACCAAACTGGGGTTTAAGGGACTTGCAACA AGAGATTGGTAAACGTTTTGAGATAGATGATTTCACGGATATTGGTCTCAATTATATGGATGATAATGGGGAATGGGTTCGTTTGACCTGCGATGGTGAT CTTGAGGAGTGCAAAGAGATACACATATTCTCTCAAAGAAACACAATGAAGATCTCCTGTCACGATCCGAATCTCGTGTCCATGACCAGCAATACAGGAG CAACATTGTAA
AA sequence Show only first row Show all	>Potri.009G166666.1 pacid=42771274 polypeptide=Potri.009G166666.1.p locus=Potri.009G166666 ID=Potri.009G166666.1.v4.1 annot-version=v4.1 MDDHRSSTPNSTFETFSGNVTNWDFMDEILYQGWFEKDGGFNFLQQGRLSTSNVLHDPSLYIPVTGTPNWSTASNQQDYQEETERHCHGNPPLDYSNSTD LVQTELQVEDSVETSTPFAHPASCRVEAAGLGCEWQMVQRVNPGTSCSVKERVLQAVGYLKNCIQDRDILIQIWLPMEKEGKRVLATIDQPYFVDPSCKS LASYRKVSTAYHFQAEEDAKCSVGFPGRVFLEKLPEWTPDVRLFRREEYPHKDHAVQHNIRGSLALPLFKQGSETCLGIVEIATTIQKISYRPELQDICK VLQAVDLRSSEDFCSPGVETCNRLNRAAVPEISDIVKSVCKTYRLPLALTWALCSRQGKSGRQQFPERFSSCISTVDSACFLADRGFSGFHMASFEQYLF LGQGIVGRAFTTQKQCFTNDITSFSKKDYPLAHHAKIFGLHAAIAIPLRSISTGLVEFVLEFFLPKDCQDTEEQKEMWDLLPISIKQVCWSLQVVMDKEL DQGENQSFVSSPSKEPPRDESSWIAWMVEAQKKGKSCCITWDYPKEPKEEFKMITPWDDSEEELDNKQVISELGQLQQNPRPNSCIEGDGVSSAFGGCRS LGSRKTGKKRRTKTAIQTISLEVLRRYFAGSLKDASQSLGVCSTTLKRICRQHGIKRWPSRKINKVGHSLRKLQQVIDTVQGAKGAVQIESFYSAFPELS SPKISSHAPYSSLRSDNSKHLDSPPDDSSPSGTASKSHSSPCSGKSCSSNCCSARAQQHDATTITVSSNGNGALLAETSNGILKRTCSSELAEFHSMNNH GDPDFLVRSQIHKTRTVSGHIHQSELGSPRFAQSLREGGVFGVKAIFGVEKVRLGLQPNWGLRDLQQEIGKRFEIDDFTDIGLNYMDDNGEWVRLTCDGD LEECKEIHIFSQRNTMKISCHDPNLVSMTSNTGATL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166666 [exp]	0	1
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	8.12	0.9717
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	10.00	0.9689
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	11.18	0.9689
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006750 [exp]	11.83	0.9663
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	13.41	0.9669
AT1G16670			Protein kinase superfamily pro...		Potri.008G040800 [exp]	14.69	0.9450
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	15.90	0.9651
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	16.49	0.9659	Pt-NRAMP1.4
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	16.70	0.9652	Pt-ZIP6.4
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	19.28	0.9651

Compare expression of checked genes

Potri.009G166666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.