Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 874 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 840 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G76350 528 / 1e-174 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 527 / 1e-173 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G64530 413 / 5e-130 NLP6 Plant regulator RWP-RK family protein (.1) AT2G43500 343 / 6e-103 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G38340 311 / 7e-93 NLP3 Plant regulator RWP-RK family protein (.1) AT4G24020 303 / 2e-88 NLP7 NIN like protein 7 (.1) AT3G59580 256 / 4e-72 NLP9 Plant regulator RWP-RK family protein (.1.2) AT5G66990 50 / 2e-06 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205500 [exp] 1452 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 878 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 877 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 866 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.005G251700 [exp] 802 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 792 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.001G087900 [exp] 409 / 9e-127 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 380 / 6e-116 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 379 / 1e-115 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023930 [exp] 681 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 667 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 465 / 2e-149 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 461 / 1e-147 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 398 / 6e-123 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 364 / 4e-112 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10013224 [exp] 339 / 8e-104 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 335 / 3e-102 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10001811 [exp] 279 / 1e-83 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10008143 [exp] 275 / 3e-78 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.009G166932.2 pacid=42771923 polypeptide=Potri.009G166932.2.p locus=Potri.009G166932 ID=Potri.009G166932.2.v4.1 annot-version=v4.1 ATGCAAGTACTCGACATGGATGATGGAAATGGTGCTTTTGCTCCTGATTCTTCATTTGGGAACTTCTCGGATGCTGCCATGGACTTGGATTTCGTGGATG AACTCTTGTATGATGGATGCTGTTTTGAGACTGTCGATGAGTTCGGTTTTTTGGAGGCTGGTACCTCAGCCTCTAATGATCTAAATGACCCTAAGCAATA TCTTCCGTTTTTTGAGTCCAACAGCTGTAATTTGAATGTAAATCCTTGTCAAGAGAACTATCAAGTAGCAACAGAAAAGAACTGTGACGAGAACCCGCCT ATAGGAAATCCCAAAATAGAGGAACTTGGTGTGATCGGATACCAAAACCAGAATATTCACCCGTTTACCGCATCTTCAGTCCAATCTGGAGGTTTTCTAG TTGAGAAAAATGAATTGGGTAGAAGATTGTGGATTGCACCAACTAACAATGCGAGATCATCTACTGGGGTAAGAGAAAGATTGATGCATGCTATAGGACA GTTGAAACAATGCACCAAGGATAGGGATCTCCTTATTCAGATATGGGTGCCTATAAAGAAAGAAGGCAAGCATGTCCTCACCACTTTTGGCCAGCCATAC TTGCTTAATCCTAAAAGCCAGAGTCTTGCAAGTTACAGAAATGTTTCAAAAAAATTTCAGTTCCCAGCAGAGGAGGATTCAAAAGAGTTGGTTGGTTTGC CCGGTCGAGTTTTCTTGAGGAAGTTGCCTGAGTGGACACCAGATGTTAGTTACTTCAGCTGGGTTGAGTATCCACGTAAAAATCATGCGAAGCAATTCAA TATAAGAGGATCCTTTGCAGTTCCTGTTTTTGAACAGGGCAGCAGAACTTGTTTGGGTGTTATTGAGGTCGTGACAACCACTCAAGACGTCAGTTATCGT TCAGAGCTAGAAAGTGTCTGCAAAGCTCTTGAGGCTGTTGATCTTAGGAGTCCAAAAGACTTCCGCCCTTCAAGCCTGAAGGCTTGCAAAGAGTTTTGCC AAGCTGCAGTTCCTGAGATATCAAAGATTTTGGAGTCTGTTTGCAAGACACATAGATTACCTTTAGCACTAACGTGGGCCCCATGTTTCCGGCAAGGTAA AGGTGGATGCCGGCATTTTGATGAGAACTATTCTAATTGTATTTGTACGGTGAACTCTGCTTGCTTTGTAGCCGAGACAGACAACTTTGGGTTCTATGTG GCATGTTCTGAGCAATACCTTTCATTTGGTCAGGGGATTGTTGGGAGAGCTTTCACAACAAGAAAACAGTGTTTTTCAACTGATGTAGCAGCGTTTAGCA AGACAGATTATCCTCTCTCTCACCATGCTAAGATGTTTGAGTTGCATGCTGCTATAGCGATTCCAGTACAAAGCACCTATGCTGGACCGGTTGATTTTGT CCTGGAGTTTTTCTTTCCAAAGGATTGCTGTAACACTGAAGAACAAAAACGAATGTGGGACATATTGCCTATCACCATAAAACAGGCTTGTTGGAGTTTG CATGTTGTCATGGACAAGGAGCTTGAGGAAACTGTCAACAAGAAAATGGTAGTTGCTTCAGATGAGAGACTTAATAAAGATGAAACTCAGAAATTTGCAT CTTTGTTCAAAGAATCTTCTGAAGCAGAATCATCCTGGATTGCCCGTGTTGCGGAGGCTCAGCAGAAAGGTAAAGGTGTCTGTGTCTCATGGGACCATCG AAAGGAGGAAAATAAAGAAGAGTTCAAGGTGACATCTCACTGGGGTAAGACTCAGGATGAATTGTACCACAAGCAGGCATTTCCAGAGTTTGGGAAATTT CAACAAAATTCTGTACCCAAAGGTAGTATTGAATCTACTACAGATGCTGCTTCTGCTGAACACCACTCAGTAGGCAGCAGAAAATCGGGCGACAAGAGAC GAACCAAGACAGAGAAGACAATAAGCTTGCAAGTTCTTCGACAGTACTTTGCAGGAAGCCTTAAAGATGCTGCGAAGAGTATTGGGGTGTGTCCCACCAC TCTGAAAAGAATATGCAGGAAGCATGGCATCACTCGTTGGCCCTCTCGAAAGATTAAGAAGGTTGGCCACTCATTGAAGAAACTTCAACTTGTGATTGAC TCAGTACAAGGTGCAGAGGGTGCCATACAAATTGGTTCCTTCTACACCACTTTCCCAGAATTGACCTCTCCAAATTTTTCTGCTAATGGTGGTTTTCCAT CAAGCAAGGCAAATGATGATTCCAATAAATCAAACCATCGCCCTGAGAATGGCATATTTAGTGCTGCAGCTAGTGCTTCAAAATCCCCATCCTCGTCATC TAGTCAGAGCTCTGGATCAAGCATCTGTTGTTCCACTGGAGTAAAGCAGCACACGACCACCAATAATGGCTCAGTTAGTGGGTATCCATTATTGGTAGAG GACCCGGGTGGTGTGCTTAAGAGAACACACAGTGATGCCGCATTGCATGCCTTGAATCGTGACAAATCAGAGCCTCTTATAAGATCTCAAAGCTTCAAAA CATTTGGCGACCTTCCAAATCCAGAGACTCTGCCACCCCTCCCAAAAAGTAGCAGCCAGATTATACGTGATAGGAGTGGCTTTAGAGTGAAGGCCACTTT TGGAGCAGACAAAATCCGGTTCACCTTGCAACCGAACTGGGGTTTCAGGGACTTGCAACAAGAGATTGCAAGGCGTTTCAATATAGACGACATTTGTAGA ATTGATCTCAAGTATTTGGATGACGATCAAGAGTGGGTTCTCTTGACATGTGATGCTGACCTTGAGGAGTGTAAAGATGTCTACAAATTGTCTGAGAGCC ACACAATCAAAATGTCCCTTAATCAACCTTCTCAACCACATCTGGGAAGTTCGTTGGGTTCTGTAGGGCCAAATCTGGTAAGCTTATTGGGAGGTGGAGG GCCATTCTAA
AA sequence Show only first row Show all	>Potri.009G166932.2 pacid=42771923 polypeptide=Potri.009G166932.2.p locus=Potri.009G166932 ID=Potri.009G166932.2.v4.1 annot-version=v4.1 MQVLDMDDGNGAFAPDSSFGNFSDAAMDLDFVDELLYDGCCFETVDEFGFLEAGTSASNDLNDPKQYLPFFESNSCNLNVNPCQENYQVATEKNCDENPP IGNPKIEELGVIGYQNQNIHPFTASSVQSGGFLVEKNELGRRLWIAPTNNARSSTGVRERLMHAIGQLKQCTKDRDLLIQIWVPIKKEGKHVLTTFGQPY LLNPKSQSLASYRNVSKKFQFPAEEDSKELVGLPGRVFLRKLPEWTPDVSYFSWVEYPRKNHAKQFNIRGSFAVPVFEQGSRTCLGVIEVVTTTQDVSYR SELESVCKALEAVDLRSPKDFRPSSLKACKEFCQAAVPEISKILESVCKTHRLPLALTWAPCFRQGKGGCRHFDENYSNCICTVNSACFVAETDNFGFYV ACSEQYLSFGQGIVGRAFTTRKQCFSTDVAAFSKTDYPLSHHAKMFELHAAIAIPVQSTYAGPVDFVLEFFFPKDCCNTEEQKRMWDILPITIKQACWSL HVVMDKELEETVNKKMVVASDERLNKDETQKFASLFKESSEAESSWIARVAEAQQKGKGVCVSWDHRKEENKEEFKVTSHWGKTQDELYHKQAFPEFGKF QQNSVPKGSIESTTDAASAEHHSVGSRKSGDKRRTKTEKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRKHGITRWPSRKIKKVGHSLKKLQLVID SVQGAEGAIQIGSFYTTFPELTSPNFSANGGFPSSKANDDSNKSNHRPENGIFSAAASASKSPSSSSSQSSGSSICCSTGVKQHTTTNNGSVSGYPLLVE DPGGVLKRTHSDAALHALNRDKSEPLIRSQSFKTFGDLPNPETLPPLPKSSSQIIRDRSGFRVKATFGADKIRFTLQPNWGFRDLQQEIARRFNIDDICR IDLKYLDDDQEWVLLTCDADLEECKDVYKLSESHTIKMSLNQPSQPHLGSSLGSVGPNLVSLLGGGGPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	0	1
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	2.00	0.8942
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	2.44	0.9049
AT1G03000		PEX6	peroxin 6 (.1)		Potri.014G133000 [exp]	3.87	0.8921
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	4.58	0.8985	Pt-EMB177.4
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G020900 [exp]	6.85	0.8409	Pt-RGA.59
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	7.34	0.8752
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	7.34	0.8807
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	7.48	0.8681
AT1G14205			Ribosomal L18p/L5e family prot...		Potri.008G087100 [exp]	7.93	0.8568
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	8.12	0.8724

Compare expression of checked genes

Potri.009G166932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.