Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38350 1679 / 0 Patched family protein (.1.2) AT1G42470 1474 / 0 Patched family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009600 [exp] 1666 / 0 AT4G38350 1726 / 0.0 Patched family protein (.1.2) Potri.005G251800 [exp] 1662 / 0 AT4G38350 1738 / 0.0 Patched family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016019 [exp] 1542 / 0 AT4G38350 1711 / 0.0 Patched family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0322 [poplar] [flax] RND_permease PF02460 [poplar] [flax] Patched Patched family CL0644 [poplar] [flax] Fz PF16414 [poplar] [flax] NPC1_N Niemann-Pick C1 N terminus
Representative CDS sequence Show only first row Show all	>Potri.009G167000.3 pacid=42771420 polypeptide=Potri.009G167000.3.p locus=Potri.009G167000 ID=Potri.009G167000.3.v4.1 annot-version=v4.1 ATGGCGATGCTCTTTCTGCTTCTCTTGTTCTCTTCTTCTTTGATTTCTGGTTTCACTTACGGTGCAAAGCATGAGAAAGAGTACTGTGCCATGTATGATA TCTGTGGAGCACGCAGTGATGGCAAAGTTCTCAATTGCCCCTTTCCTACCTCTTCTGTCAAGCCTGATGACTATTTCTCTGCTAAGATTCAAAGCTTGTG TCCTGCAATTAGTGGAAATGTTTGTTGTACTGAGACTCAATTTGACACTTTGCGAGCTCAGGTCCAACAAGCAATTCCTTTGCTTGTAGGCTGCCCAGCT TGCTTGAGGAACTTCTTAAATCTTTTTTGTGAGCTATCTTGTTCACCCAATCAAAGTCTTTTCATCAATGTCACTTCTATTTCTGAGGTTAATGGCAATC TCACTGTGGATGGTATTGCCTATTATGTAACCGATGATTTTGGAGAAAGGCTCTATGACTCCTGCAAGGATGTAAAATTTGGGACTATGAATACACGAGC AATAGATTTTGTTGGTGGTGGTGCCAATAATTTTAAAGAATGGTTTGCATTTATTGGTCAGAAGGCACCCCCTGGGTTTCCTGGTTCACCTTATGAAATT GATTTTAAGTCAACTATTCCCGATTCATCAAAAATGGTCCCTATGAATGTCTCTGCTTATTCATGTGGAGACACTTCACTGGGATGCTCTTGTGGTGATT GCCCTTTAGCTCCAGCGTGCTCTAGTTCAGAGCCACCTTCTCCGCCCAAGAAAGAATCCTGTCTGATTAGAATTGGGCCTCTCAAGGTTAAATGTCTTGA TTTCTCTGTAGCAATCTTGTACATCATATTGGTTTTTGCATTTCTGGGATGGGCTTCTCTTAATCGGACAAGAGAAAGAAGAGCTGCTGCCAGCAAAGAA CCATTGTTGAGTTCGATGGATGAGGTTGAAGCTGATTCTACTGAAATCCAAAAGGATGGAAAGGTGCCTCGGTTGATAAATAGGTTCCAACTAGATGGTG TTCAAGGACATATGTCAAGCTTTTACAGGAATTATGGAAAATGGGTTGCTAGAAATCCTACTCTTATCCTCTGTTCATCAGTTGCAGTTGTTCTTGTGCT TTGTATAGGATTAATCTGTTTTAAGGTGGAGACCCGGCCCGAGAAGTTGTGGGTAGGTCCTGGGAGTAAGGCAGCAGAAGAGAAACATTTTTTTGACAGC CACCTTGCCCCCTTCTACAGAATTGAACAGCTTATATTAGCAACCTTGCCAGATTCGAAGAATGACAAGAGAAACAGTATTGTCACAGATGAAAATATCC AGTTACTATTTGAAATACAGAAGAAGGTTGATGGAATTCGTGCAAATTATTCAGGCTCAGTTGTATCTCTGACAGACATTTGCTTGAAGCCTCTTGGCGA TGATTGTGCCACTCAAAGCTTGCTACAGTATTTTAAAATGGACCCTGAAAATTATGATGACTATGGAGGAGTGGAACATGCTGAGTATTGCTTTCAGCAT TATACTACTGCAGACACTTGTATGAGTGCATTTAAAGCCCCTCTTGACCCTAGCACTGCCTTAGGAGGATTTTCTGGGAACAACTATTCTGAGGCATCTG CATTTGTCGTTACCTACCCAGTTAATAATGCAATTGATGAAGCAGGCAATGGAAAGGCTGTGGCATGGGAAAAAGCTTTCATTCGGTTAGTGAAGGAAGA GCTGCTGCCCATGGTGCAGTCTAGCAATCTTACACTTTCGTACTCAAGCGAAAGCTCAATTGAGGAAGAATTGAAAAGAGAAAGTACTGCAGATATTATA ACTATAGCAGTGAGCTATGTTGTAATGTTTGCTTATGTTTCTGTGACATTGGGGGATGCATCACGCTTGTCTACCTTCTTTCTCTCATCCAAGGTATTGC TTGGTCTTTCAGGAGTTGTTCTTGTTATGCTTTCTGTCCTTGGATCTGTTGGATTTTTCAGTGCAGTTGGAGTCAAATCTACATTAATAATAATGGAAGT CATTCCTTTCCTGGTTTTGGCGGTTGGAGTGGATAACATGTGTATATTGGTGCATGCTGTGAAGCGCCAATCAATTGAGTTAGCTATAGAGGAGAGAATA AGTAATGCACTGCATGAAGTTGGCCCATCAATTACACTTGCTAGTTTGTCTGAGATTCTGGCATTTGCTGTTGGAAGTTTTATTCCTATGCCAGCATGCC GTGTTTTCTCCATGTTTGCAGCTTTGGCTGTTCTATTGGACTTTCTTCTTCAAGTCACAGCTTTTGTTGCACTGATTGCATTTGACTGTCGGAGAGCTGA GGATAACAGGATTGACTGTTTCCCGTGCATCAAAGTTCCTTCATCACCTGGAGGATCTAATGAAGGCATTAATCAAAGAAGACCTGGACTTTTGGCCAGA TATATGAAGGAAGTTCATGCACCCATTCTTGGACTTTGGGCAGTAAAAATAGTAGTCATTGCTATCTTTGTTGCATTTGCGTTGGCAAGTGTGGCACTAT GTCCTAGGATTGAGTCTGGTTTGGAGCAACAAGTGGTTCTTCCCCGTGATTCCTACCTTCAGGGTTATTTCAATAATATTTCCGAATATCTGAGAATTGG ACCACCCTTGTATTTTGTTGTTAAAGATTACAACTATAGCTTGGAATCAAGGCATACAAACCAGTTATGCTCCATCAGCCAGTGTGATTCAAACTCCCTT TTGAATGAGGTATCGAGGGCATCTTTAGTTCCAGAATCAAGCTACATAGCCAAGCCTGCTGCTTCATGGCTTGATGACTTTCTTGTTTGGTTATCACCAG AGGCCTTTGGTTGTTGTCGTAAGTTCATGAATGGTACTTATTGCCCACCAGATGATCAGCCTCCTTGCTGCTCACCTGATGAATTTTCTTGTGGCTTTGG TGGAGTTTGCAAAGACTGCACAACGTGCTTTCGGCATTCGGATTTGGTTAATGATCGGCCATCTACAGTGCAATTTAGAGAGAAACTTCCATGGTTCCTT GATGCTCTGCCATCTTCTGATTGTGCAAAGGGTGGTCATGGGGCTTATACCAGCAGTGTGGATCTAAATGGTTACGAGAATGGTGTTATAAGAGCTTCAG AGTTCCGTACATATCACACGCCGGTTAACAAACAAGGGGACTATGTCAATGCTCTACGAGCTGCAAGGGAATTCAGTTCAAGAATTTCTGATTCCTTGAA GATTGAAATCTTTCCATATTCTGTGTTCTACATTTTCTTTGAGCAGTACCTGGACATTTGGAGGATAGCTTTGATCAACATTGCTATAGCACTTGGTGCT ATATTTATTGTATGTCTGGTCATTACTTCCAGTTTTTGGTGTTCAGCAATCATTCTACTTGTTTTGGTGATGATTGTTGTGGATTTAATGGGTGTAATGG CAATTCTGGATATTCAACTAAATGCAGTTTCTGTTGTCAACCTTATAATGTCAATTGGAATTGCCGTTGAGTTTTGTGTGCATATAGCACATGCATTCTT GGTGAGCCATGGTGATAGGGGCCAGAGGGCAAAAGAGGCTCTGAGCACAATGGGAGCTTCCGTCTTCAGTGGAATTACACTCACAAAGCTTGTTGGAGTG ATTGTCCTTTTCTTTGCGAGATCTGAAGTTTTTGTGGTTTATTACTTCCAAATGTACCTGGCATTGGTTATTATAGGTTTCTTGCATGGACTGGTGTTCC TCCCAGTGGTGCTGAGCGTGTTCGGTCCGCCACCAAGACATGTCATCATGGAAACAAGATGA
AA sequence Show only first row Show all	>Potri.009G167000.3 pacid=42771420 polypeptide=Potri.009G167000.3.p locus=Potri.009G167000 ID=Potri.009G167000.3.v4.1 annot-version=v4.1 MAMLFLLLLFSSSLISGFTYGAKHEKEYCAMYDICGARSDGKVLNCPFPTSSVKPDDYFSAKIQSLCPAISGNVCCTETQFDTLRAQVQQAIPLLVGCPA CLRNFLNLFCELSCSPNQSLFINVTSISEVNGNLTVDGIAYYVTDDFGERLYDSCKDVKFGTMNTRAIDFVGGGANNFKEWFAFIGQKAPPGFPGSPYEI DFKSTIPDSSKMVPMNVSAYSCGDTSLGCSCGDCPLAPACSSSEPPSPPKKESCLIRIGPLKVKCLDFSVAILYIILVFAFLGWASLNRTRERRAAASKE PLLSSMDEVEADSTEIQKDGKVPRLINRFQLDGVQGHMSSFYRNYGKWVARNPTLILCSSVAVVLVLCIGLICFKVETRPEKLWVGPGSKAAEEKHFFDS HLAPFYRIEQLILATLPDSKNDKRNSIVTDENIQLLFEIQKKVDGIRANYSGSVVSLTDICLKPLGDDCATQSLLQYFKMDPENYDDYGGVEHAEYCFQH YTTADTCMSAFKAPLDPSTALGGFSGNNYSEASAFVVTYPVNNAIDEAGNGKAVAWEKAFIRLVKEELLPMVQSSNLTLSYSSESSIEEELKRESTADII TIAVSYVVMFAYVSVTLGDASRLSTFFLSSKVLLGLSGVVLVMLSVLGSVGFFSAVGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQSIELAIEERI SNALHEVGPSITLASLSEILAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIAFDCRRAEDNRIDCFPCIKVPSSPGGSNEGINQRRPGLLAR YMKEVHAPILGLWAVKIVVIAIFVAFALASVALCPRIESGLEQQVVLPRDSYLQGYFNNISEYLRIGPPLYFVVKDYNYSLESRHTNQLCSISQCDSNSL LNEVSRASLVPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFMNGTYCPPDDQPPCCSPDEFSCGFGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWFL DALPSSDCAKGGHGAYTSSVDLNGYENGVIRASEFRTYHTPVNKQGDYVNALRAAREFSSRISDSLKIEIFPYSVFYIFFEQYLDIWRIALINIAIALGA IFIVCLVITSSFWCSAIILLVLVMIVVDLMGVMAILDIQLNAVSVVNLIMSIGIAVEFCVHIAHAFLVSHGDRGQRAKEALSTMGASVFSGITLTKLVGV IVLFFARSEVFVVYYFQMYLALVIIGFLHGLVFLPVVLSVFGPPPRHVIMETR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38350			Patched family protein (.1.2)		Potri.009G167000 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014380 [exp]	3.87	0.8063
AT3G61960			Protein kinase superfamily pro...		Potri.002G181000 [exp]	23.17	0.6474
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145566 [exp]	25.63	0.7557
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	28.93	0.7154
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	33.91	0.7486
AT5G44870		TTR1, LAZ5	tolerance to Tobacco ringspot ...		Potri.006G282700 [exp]	40.54	0.7527
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	40.98	0.6845
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	42.53	0.6376	Pt-PI3.1
AT4G23270		CRK19	cysteine-rich RLK (RECEPTOR-li...		Potri.011G035850 [exp]	42.98	0.7249
AT1G47530			MATE efflux family protein (.1...		Potri.002G132300 [exp]	54.26	0.7282

Compare expression of checked genes

Potri.009G167000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.