Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 536 / 0 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 450 / 3e-157 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G02290 418 / 6e-145 NAK Protein kinase superfamily protein (.1.2) AT1G76360 417 / 3e-143 Protein kinase superfamily protein (.1) AT1G07570 408 / 1e-140 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 407 / 3e-140 APK1B protein kinase 1B (.1.2.3) AT2G02800 395 / 3e-135 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 394 / 6e-135 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G39660 390 / 7e-134 BIK1 botrytis-induced kinase1 (.1) AT1G69790 387 / 1e-132 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206100 [exp] 729 / 0 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.007G062700 [exp] 524 / 0 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 507 / 3e-179 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G251900 [exp] 456 / 3e-159 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 443 / 1e-153 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.010G203400 [exp] 422 / 2e-146 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G031300 [exp] 422 / 3e-146 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 420 / 3e-145 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 416 / 3e-144 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001392 [exp] 626 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 624 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 617 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023000 [exp] 609 / 0 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10024512 [exp] 488 / 7e-172 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 481 / 6e-169 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 440 / 5e-153 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 435 / 4e-151 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10023794 [exp] 424 / 9e-148 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 421 / 6e-146 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G167400.5 pacid=42771199 polypeptide=Potri.009G167400.5.p locus=Potri.009G167400 ID=Potri.009G167400.5.v4.1 annot-version=v4.1 ATGGGGATTTGCTGGGGTTCTTCTGCTCATAGTCCTACTACACCTTCTACCACCGGTCATCTAAGTACAGCAGGCATATCCCAGACAACTAGCGATACTG CTTCTTCTGGGGTGAGCAATGCAACGTCGTCTAGGGGCAGCAACATCTCTGCACACAGCCGGTTTTCGGCTGGGAGTGGTGATGAGGAGTTCCCAAATGG GCAGATTTTGCCTACCCCCAACTTGCGGATATTTTCTTTTGCAGAACTAAAGGTTGCCACCAGGAATTTTAAATCTGATACTTTGCTTGGCGAGGGAGGT TTTGGTCAAGTCTACAAAGGATGGCTTGACGAGAAGGCGCCAGGGAGAATTGGAAGTGGAACTATAATTGCTGTTAAAAGATTGAATTCCGAGAGCTTGC AAGGATTTGAAGAATGGCAGTCGGAGGTAAATTTCTTAGGAAGGCTTTCTCATCCCCACCTTGTAAGGCTGATAGGATACTGCTGGGAGGTTAAGGAACT TCTCCTTGTTTATGAATTCATGCAGAAGGGAAGCTTGGAGAACCATTTATTTGGAAGGGGTTCAGCTGTTCAGCCACTTCCATGGGACACACGGCTCAAG ATTGCCATAGGAGCAGCTAGAGGCCTTGCTTTCTTGCACACATCAGATAAGCAAGTGATTTACAGAGATTTTAAAGCCTCCAATATACTGCTTGATGGGG CTTACACAGCAAAATTATCAGACTTTGGCTTGGCAAAATTGGGCCCTTCAGCTAGTCAATCACACGTGACAACACGGGTGATGGGAACCTATGGTTATGC AGCTCCTGAATATGTTGCAACAGGGCATTTATATGTAAAAAGTGATGTATACGGTTTTGGGGTTGTCCTGGTTGAGATTCTGACTGGCTTACGGGCACTT GATATAAACCGTCCAAGTGGGAGACATTCTCTGGTGGACTGGATCAAGCCATATTTATCTGATAAAAGAAAATTGAAGAGCATTATGGATTCTCATTTAG AGGGTAGATATCCTTCCAAAGCAGCACTGCAAATAGCTCAGCTTGCTCTAAATTGTCTTGAATCTGAACCCAAGCACCGTCCACATATGAAACAAGTTGT GGAAACTTTAGAACGAATTGAAGCATCCAAGGAGAGACAAGGACAGACTAGAACTCGTCCTAACCGTTCTAAGTCTCACCAAAACGGCCAGCAACCCTTG CAATATCACTCTCCTCTTCATCCAATTCCGGATCGAAGTCGAGGCTACCAACACTCTCCGCGAGCAAGCTGCTGGATTTAG
AA sequence Show only first row Show all	>Potri.009G167400.5 pacid=42771199 polypeptide=Potri.009G167400.5.p locus=Potri.009G167400 ID=Potri.009G167400.5.v4.1 annot-version=v4.1 MGICWGSSAHSPTTPSTTGHLSTAGISQTTSDTASSGVSNATSSRGSNISAHSRFSAGSGDEEFPNGQILPTPNLRIFSFAELKVATRNFKSDTLLGEGG FGQVYKGWLDEKAPGRIGSGTIIAVKRLNSESLQGFEEWQSEVNFLGRLSHPHLVRLIGYCWEVKELLLVYEFMQKGSLENHLFGRGSAVQPLPWDTRLK IAIGAARGLAFLHTSDKQVIYRDFKASNILLDGAYTAKLSDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRAL DINRPSGRHSLVDWIKPYLSDKRKLKSIMDSHLEGRYPSKAALQIAQLALNCLESEPKHRPHMKQVVETLERIEASKERQGQTRTRPNRSKSHQNGQQPL QYHSPLHPIPDRSRGYQHSPRASCWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.009G167400 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.004G148300 [exp]	1.41	0.9127
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.010G147700 [exp]	3.46	0.8814
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	8.12	0.8811	CBP60.12
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171500 [exp]	9.53	0.8568
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	9.59	0.8689
AT2G17705			unknown protein		Potri.005G107700 [exp]	10.39	0.8633
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G022500 [exp]	10.72	0.8679	MYB173
AT5G37490			ARM repeat superfamily protein...		Potri.008G137700 [exp]	10.95	0.8575
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	13.49	0.8654
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	14.69	0.8049

Compare expression of checked genes

Potri.009G167400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.