Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 315 / 4e-97 DNA-binding bromodomain-containing protein (.1) AT1G76380 285 / 1e-86 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 265 / 1e-76 DNA-binding bromodomain-containing protein (.1.2) AT3G01770 77 / 2e-14 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G14270 71 / 2e-12 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G27260 68 / 2e-11 GTE8 global transcription factor group E8 (.1.2) AT5G63320 64 / 3e-10 NPX1 nuclear protein X1 (.1.2.3) AT5G46550 62 / 7e-10 DNA-binding bromodomain-containing protein (.1) AT1G06230 61 / 2e-09 GTE4 global transcription factor group E4 (.1.2.3) AT2G34900 56 / 3e-08 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206200 [exp] 1006 / 0 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 333 / 9e-104 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 328 / 1e-101 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 150 / 1e-37 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 147 / 1e-36 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 119 / 1e-27 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.001G376400 [exp] 68 / 7e-12 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.015G091800 [exp] 69 / 1e-11 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.005G217400 [exp] 68 / 2e-11 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022999 [exp] 374 / 3e-121 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 368 / 7e-119 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 328 / 3e-102 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 322 / 1e-99 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 268 / 1e-77 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 261 / 6e-75 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10033624 [exp] 69 / 8e-12 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 69 / 1e-11 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 69 / 1e-11 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10032076 [exp] 62 / 1e-09 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.009G167500.1 pacid=42771281 polypeptide=Potri.009G167500.1.p locus=Potri.009G167500 ID=Potri.009G167500.1.v4.1 annot-version=v4.1 ATGGGTAAGCTAGTAGAGAAGACGAAGAAGAAGAAAGGAAGACCTTCTTTATTAGATCTCCAAAAACGCTCCTTAAATGAACAGCTAAACCAGCAACAAC AAAAGAAACGTAATCATCTTCGAAACGTTTCGCCTTCTCTTTCCAATTCAAGCAATTCAACAACGACCCCTAATTCTTCTCAAATTCACAAATCTGCCAC TAGCACTGCTACTCCTCTCCGTCGATCCACTCGCCGCAACCCTACCAACGACGACACCTACCAGGACTCCTCTGATGATGAAGACAACACTGAATTGAAT GGAAAGCGCCGTCGGGAGAAGAAGCTGAAGCTGGTTCTTAAATTGCCCAAACCAGACACTAATTCGACGTCGTTTAGCTCGACCGGAGAGGAATCGAACG GTGAGGAAGAGAAGAATACGGGGTCGAATAAGAAGAAGAGGAAAATCAATGCATCTGAGATTGAAAAGGGAGATCAGAATTCTACAACTGGAACGAACCC AACAAGCAATGCCCAAGATTCTGGACCCTCAACGCCTTTACCTGATAAAAAGCTGTTGCTGTCAATCCTGGACAGGCTTCAGAAGAAGGACACGTATGGT GTCTTCTCTGAGCCAGTGGACCTGGATGAGCTGCCAGATTACCTTGAAGTCATTGAGCATCCCATGGATTTTGGAACCGTCAGAAAGAAACTCACTAATG GAGCTTATGGCAGTTTGGAACTATTCGAGGAAGAGGTTTTCTTAATATGTACAAATGCAATGCAGTATAATGCCCCGGATACCATATATTTTCGACAGGC ACGATCTATACAAGAGTTGGCAAAAAAGAACTTCGAAAATTTGAGGCAAGATAGTGATGATAATGAAGCAGAACCTAAAGTAGTAAGAAGAGGGAGGCCA CCTTCTGAGAATTTCAAAAAATCACCGGGCAGGCCTTCATTGGACCTTGCTGGTTCCGAGTTTCCCACAGGTAGAACTCTTGCTACAGGTGGAGAGAATA GATCTTCAGAGAAGTCTGGTTTTGCAGATTCGTCAGGACAATTTCATGGTTCCCGCAATGAAGCTTATTTGTCGACTGACAACAGATTTGAGAGGAATGA TGAAACTGCAGGTTCTATACTTAAAGGTAAGCATATTAAGAAGCATTTGGCACTTGATGAGAACAGGCGTAACACATATAAGCAATTCCATCCTTCAGCT GGTGGGCGAGTGCCATCTGTGCTGACCACTTTTGATGCAGAAAGGAAGCAGCTAGTGGCTGTGGGACTTCTGACAGAGCATGGTTATGCAAGGAGTATAG CACGATTTGCTGCGAACATTGGACCTTTTTCCTGGACGATTGCAGTTAAAAGAATAGAAAAATCTTTAGCGCCTGGAGTTAAGTTTGGTCCTGGATGGGT CGGAGAAAATGACATTCCACCACAGAAGGCTTTATTTTCTTCACCCATGCCAAGTCAGCTGGCACCACCACCATCACTGCCACCACAAAAGCCCTTCTCT GTTCTTGAAAGTTCAGCTGCTACTGCCACAGCTTGCGGTGTTAAATCGAAACAAGGGAAATTGTCAGCGAAACCTGAGAAAGATATTTTTCCAGAGAAGC AGGTGCCTTCAACTCGCCTGTCAGAGGCACATTTTAGTTCGGTTCCTCCATCCACCTCAATGACTACATCCGTCTCGGCTGTCAATAAATCTGAACCTTT CACAGAAAGAGCAGAATCAGTACCAAAATTAAATTCCCATTCTGCATTTAATGTACTGAACAGTAGTACGGGTGTGATGAGGCAAACGGCTCCATCTCAA CTTCATCAGAACCCAGCCATTCACCCTGGCACGATTGGATTTAATGCCACGTATGGGTTTAACCTTGCAGCCCAGATGGGAAAACTAATTGGAGTTGCTA GGCCTGCTGGGTTAGGCATTCAGTCATCTCAGATGGCCGACAAGGTCTCTAGAACTAATTCTAACCTGGTCCGTTCAGCAAATGCAAACAGCATAAACTC AGAGAAAATGAAGTTCCCCGAGAATTCAAGTTCAATAAAAATCAGTGGTGCATTGCCAAATTCTGGGAACGAGGCAGTGGAGGCCCCAAGATCTGTTGAC CAAGAGCAACCAACTTGGCAAGGGTTATATCCAAATCCAAGACCAGATTCAGGCTCATCATCACATCAAAAATCGGATGCTGTCCCGCCTGACTTGAATG TAAGATACCAGTCTCCAGGCTCTCCTAGTTCTGGTTGCATTGACCCAGCACAGCCAGATTTAGCTTTGCAGCTCTAA
AA sequence Show only first row Show all	>Potri.009G167500.1 pacid=42771281 polypeptide=Potri.009G167500.1.p locus=Potri.009G167500 ID=Potri.009G167500.1.v4.1 annot-version=v4.1 MGKLVEKTKKKKGRPSLLDLQKRSLNEQLNQQQQKKRNHLRNVSPSLSNSSNSTTTPNSSQIHKSATSTATPLRRSTRRNPTNDDTYQDSSDDEDNTELN GKRRREKKLKLVLKLPKPDTNSTSFSSTGEESNGEEEKNTGSNKKKRKINASEIEKGDQNSTTGTNPTSNAQDSGPSTPLPDKKLLLSILDRLQKKDTYG VFSEPVDLDELPDYLEVIEHPMDFGTVRKKLTNGAYGSLELFEEEVFLICTNAMQYNAPDTIYFRQARSIQELAKKNFENLRQDSDDNEAEPKVVRRGRP PSENFKKSPGRPSLDLAGSEFPTGRTLATGGENRSSEKSGFADSSGQFHGSRNEAYLSTDNRFERNDETAGSILKGKHIKKHLALDENRRNTYKQFHPSA GGRVPSVLTTFDAERKQLVAVGLLTEHGYARSIARFAANIGPFSWTIAVKRIEKSLAPGVKFGPGWVGENDIPPQKALFSSPMPSQLAPPPSLPPQKPFS VLESSAATATACGVKSKQGKLSAKPEKDIFPEKQVPSTRLSEAHFSSVPPSTSMTTSVSAVNKSEPFTERAESVPKLNSHSAFNVLNSSTGVMRQTAPSQ LHQNPAIHPGTIGFNATYGFNLAAQMGKLIGVARPAGLGIQSSQMADKVSRTNSNLVRSANANSINSEKMKFPENSSSIKISGALPNSGNEAVEAPRSVD QEQPTWQGLYPNPRPDSGSSSHQKSDAVPPDLNVRYQSPGSPSSGCIDPAQPDLALQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20670			DNA-binding bromodomain-contai...		Potri.009G167500 [exp]	0	1
AT5G22450			unknown protein		Potri.004G203500 [exp]	2.00	0.8684
AT1G72890			Disease resistance protein (TI...		Potri.011G012901 [exp]	8.12	0.8356
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	9.21	0.8275	Pt-SPY.1
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	10.19	0.8148
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	13.67	0.8205
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	13.85	0.8351
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	16.97	0.8154
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	17.43	0.8099	XRN2.1
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	17.94	0.8140
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	19.59	0.8074

Compare expression of checked genes

Potri.009G167500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.