Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27790 269 / 1e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G27300 244 / 9e-78 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221301 [exp] 313 / 1e-109 AT2G27790 187 / 8e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030600 [exp] 304 / 1e-105 AT2G27790 272 / 6e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030890 [exp] 300 / 9e-104 AT2G27790 263 / 2e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030598 [exp] 298 / 4e-103 AT2G27790 263 / 5e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G167600.2 pacid=42771384 polypeptide=Potri.009G167600.2.p locus=Potri.009G167600 ID=Potri.009G167600.2.v4.1 annot-version=v4.1 ATGCTTCCTCGAAACAGAGACTGCTCTCCTCCTCATCCTACGGTGGTTCGTGTTTACACTGTCTGTGACGAATCAAGATATTTGATAGTGAGGAACGTTC CTGCTTTGGGATGCGGTGATGATTTGTTCAAACTCTTTGCCTCTTATGGAGACGTTGAAGAGTGTAAACCAATGGATGCAGAAGATTGTGAGCAATTTAC TGATGTTTACTGGATCAAATTTCGTCTGGTCAGCAATGCCAGGTTTGCTAAAAGGAAATTGGACGAATCCATTTTCCTAGGGAACCCCTTGCAGGTCTCC TATGCTCCTCACTTTGAGACCGTCTCTGACACAAAGGATAAGTTAGAAGGCAGAAGGAAGGAAGTTTTTGCACGTTTGAACCCTGGAAGAACCAAGGGTC CCAAAGTTCACAACGCTGGCACTTCGAGCCAGGCTTCATTGCTTACATCACAGATTGACCACGTTTCTCAGCACCTCAACTCTAATCAATCTTGGGACTC TGGAGAATCACAAAATGTTCATCAGATAGGTGATCCTCCTATTACAAGGGTGTCCTCTGACCAGGATTACTTTCCATCCCAGTCAATGAATCAGACTGTT AGATTGGTCAGGGAGAAGCTCAATAAGATCCAATCAAGTAGTGAGCATCTTCAAGCCGGGCCTGTATCCAAGAAAGCACGAGTTGACAATAGAAGAAGAA TTTGA
AA sequence Show only first row Show all	>Potri.009G167600.2 pacid=42771384 polypeptide=Potri.009G167600.2.p locus=Potri.009G167600 ID=Potri.009G167600.2.v4.1 annot-version=v4.1 MLPRNRDCSPPHPTVVRVYTVCDESRYLIVRNVPALGCGDDLFKLFASYGDVEECKPMDAEDCEQFTDVYWIKFRLVSNARFAKRKLDESIFLGNPLQVS YAPHFETVSDTKDKLEGRRKEVFARLNPGRTKGPKVHNAGTSSQASLLTSQIDHVSQHLNSNQSWDSGESQNVHQIGDPPITRVSSDQDYFPSQSMNQTV RLVREKLNKIQSSSEHLQAGPVSKKARVDNRRRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	0	1
AT3G28700			Protein of unknown function (D...		Potri.017G077000 [exp]	3.74	0.6287
AT4G39860			unknown protein		Potri.005G076000 [exp]	5.47	0.6466
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	8.12	0.6457	Pt-UVH6.1
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.012G143800 [exp]	10.58	0.6271
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.002G248400 [exp]	11.31	0.6476	ATCSLC06.4
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	19.44	0.5935
AT3G51390			DHHC-type zinc finger family p...		Potri.005G104800 [exp]	24.24	0.5590
					Potri.003G157401 [exp]	30.16	0.5954
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	32.09	0.6103
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	39.76	0.5850

Compare expression of checked genes

Potri.009G167600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.