Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17230 499 / 1e-178 EXL5 EXORDIUM like 5 (.1) AT5G51550 367 / 7e-127 EXL3 EXORDIUM like 3 (.1) AT2G35150 351 / 8e-121 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT4G08950 147 / 1e-41 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 145 / 1e-40 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G64260 138 / 5e-38 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 118 / 7e-31 EXL4 EXORDIUM like 4 (.1) AT3G02970 71 / 1e-13 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206600 [exp] 621 / 0 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.015G129700 [exp] 386 / 3e-134 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.012G128100 [exp] 384 / 2e-133 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.015G122100 [exp] 342 / 9e-117 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.002G098600 [exp] 156 / 7e-45 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.014G126000 [exp] 154 / 6e-44 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1) Potri.005G163000 [exp] 148 / 9e-42 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.005G163500 [exp] 145 / 1e-40 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 144 / 3e-40 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013834 [exp] 515 / 0 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10026548 [exp] 510 / 0 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10031130 [exp] 366 / 3e-126 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10018314 [exp] 357 / 8e-123 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031709 [exp] 254 / 8e-84 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10017138 [exp] 238 / 3e-78 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10017050 [exp] 132 / 1e-35 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10021370 [exp] 129 / 2e-34 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 117 / 3e-30 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10013789 [exp] 117 / 5e-30 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.009G167800.1 pacid=42771002 polypeptide=Potri.009G167800.1.p locus=Potri.009G167800 ID=Potri.009G167800.1.v4.1 annot-version=v4.1 ATGTCACAGCAATCCCATTTCTCTATATCATTCTTTTATGCCTTCATATCATTATTATTTATTCACCATGTCCTTGCTTCTACTAGAACCACTCCACAAG TTCAAACCTTCAACACAAAACCAGACATTATAAACCCAAAACTTCCGCCAAGAACCCTCTCCTCCTCTAAAAAATTTGAGGGATCATCAGATTTAGTCCA TCTTCGTTACCATATGGGTCCAGTTCTCTCTTCAACTCCGATAAACATCTACCTTATCTGGTATGGCCGTTGGGCTAATTCTCAAAAACTTCTCATCAAA GACTTCCTCAACTCCATCTCCCCCACCACTGTTGCCGCCAAGCCCTCCGTCTCTGAGTGGTGGCGCACCGTGTCTTTGTACACAGATCAAACTGGAGCTA ATGTCTCACGCTCAATACTCATAGCTGGTGAATATACTGATAGTGCTTATTCACATGGGACTGGCTTAACAAGACTTACAATCCAACAAGTGATAGCTTC AGCAGTAAAGTCTGCACCTTTCCCTGTAGATCACAAGAATGGGATCTACCTTATATTGACATCACAAGATGTGACTATGCAAGACTTTTGTAGGGCGGTG TGTGGATTTCATTATTTTACATTTCCATCAATGGTTGGCTACACACTGCCTTATGCTTGGGTTGGTAACTCAGGCAAACAATGTCCCGAAGTATGCGCTT ACCCTTTTGCAGTCCCTGGTTACATGGGTGGAGGGGGGCCAGGAGCCTTGAAGTCACCAAATGGGGATGTGGGCGTGGATGGGATGATTAGTGTTATAGG CCATGAGCTCGCAGAATTGTCTTCAAATCCTTTAGTGAATGCTTGGTATGCTGGGGAGGATCCAACAGCACCAACTGAGATAGGGGACTTGTGTGAAGGG TTGTATGGGACAGGTGGTGGTGGTGGGTATACAGGGCAGGTTATGAGGGATACGCAAGGTAAGACTTTTAATATGAATGGCAGAAGAGGTAGAAAGTTCT TGGTGCAATGGATCTGGAGCCCTGAGTTGAAGGCATGTTCTGGTCCTAATGCTCTGGACTGA
AA sequence Show only first row Show all	>Potri.009G167800.1 pacid=42771002 polypeptide=Potri.009G167800.1.p locus=Potri.009G167800 ID=Potri.009G167800.1.v4.1 annot-version=v4.1 MSQQSHFSISFFYAFISLLFIHHVLASTRTTPQVQTFNTKPDIINPKLPPRTLSSSKKFEGSSDLVHLRYHMGPVLSSTPINIYLIWYGRWANSQKLLIK DFLNSISPTTVAAKPSVSEWWRTVSLYTDQTGANVSRSILIAGEYTDSAYSHGTGLTRLTIQQVIASAVKSAPFPVDHKNGIYLILTSQDVTMQDFCRAV CGFHYFTFPSMVGYTLPYAWVGNSGKQCPEVCAYPFAVPGYMGGGGPGALKSPNGDVGVDGMISVIGHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEG LYGTGGGGGYTGQVMRDTQGKTFNMNGRRGRKFLVQWIWSPELKACSGPNALD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.009G167800 [exp]	0	1
AT3G23750			Leucine-rich repeat protein ki...		Potri.018G141000 [exp]	4.47	0.8378	Pt-RHG4.1
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.010G040200 [exp]	8.12	0.8356
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	12.52	0.8865
AT3G20015			Eukaryotic aspartyl protease f...		Potri.005G063000 [exp]	12.96	0.8144
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.007G091200 [exp]	14.17	0.8485
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.010G235000 [exp]	15.29	0.8291
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	17.20	0.8403
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.008G213900 [exp]	20.73	0.7660
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	22.13	0.8591
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	46.28	0.8247

Compare expression of checked genes

Potri.009G167800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.