Plant FIBer expression Database

CGL1.3 (Potri.009G168000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CGL1.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38240 692 / 0 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G206900
[exp]
811 / 0 AT4G38240 710 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001389
[exp]
709 / 0 AT4G38240 684 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Lus10022994
[exp]
702 / 0 AT4G38240 682 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF03071 GNT-I GNT-I family
Representative CDS sequence
>Potri.009G168000.2 pacid=42772455 polypeptide=Potri.009G168000.2.p locus=Potri.009G168000 ID=Potri.009G168000.2.v4.1 annot-version=v4.1
ATGAGGAGAGTGGGATGCGATTATCGATGCCTTCTGATACCAGCCGCACTCGCATTCTTCTATATCCAGATGCGGTTATTTGTTACGCAATCAAAGTACG
AGGATCGGCTTGCTGCTGCCATTGAATCAGAGAATCATTGTACAAGTCAATCACGTTTGCTTATTGATCAGATTAGTATCCAGCAAGGCACTATCGTTTC
TCTTCAAGAACAAAATAAACGACAAAGCGAAGAGTGTAGGCAGCTCAAGGCGCTTCTTGAAGATCTTGAAAGAAAAGGCCTTAAAAAACTGGTTGATAAG
GTACCAGTGGCAGCAGTTGTGATCATGGCATGCAATCGTGCTGATTATCTAGAACGGACAATTGAGTCTGTTTTGAAGTATCAAAGCTCCGTTGCTTCAA
AGTATCCACTTTTTGTATCTCAGGATGGAACAGACCCAAATGTTAGAAGCAAGGCTATGAGTTATGATCAGCTAATGTACATTCAGCACTTGGATTCCGA
ACCAGTACATACAGAAAGGCCTGGGGAATTGATTGCATATTACAAGATTGCAAGGCATTACAAATGGGCAATGGATCAATTATTTTACAAGCATAATTTC
AGCCGAGTAATTATACTTGAAGATGATATGGAAATCGCTCCTGATTTTTTTGATTACTTTGAGGCTGCAGCAGCTCTTCTTGACAAGGATAAGTCCATTA
TGGCCGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTGCATGATCCTTATGAACTTTATCGGTCAGATTTCTTTCCTGGACTTGGGTGGATGCT
GACTAAATCAATTTGGGACGAACTATCCCCTAAATGGCCAAAAGCTTACTGGGATGATTGGTTGCGATTGAAGGAGAATCATAAAGGTCGACAGTTCATT
CGTCCAGAAGTGTGCAGAACATATAACTTTGGCGAACATGGCTCTAGTATGGGGCAGTTTTTCCAACAATATCTCCAGCCTATTAAGCTGAACGATGTAA
AGGTTGATTGGAAGTCGAGGGATTTAAGCTACCTGATGAAGGACAAGTATACAAAGCATTTTGCTGACATTGTGAGAAAAGCTAAACCTATCCAAGGAAC
TGATGCTGTTCTTAAGGCCTCTAATATAGAGGGTGATGTACGTATCCAGTACAAGGACCAACCAGACTTTGAAAGGATTGCACGCCAGCTTGGTATTTTC
CAAGAGTGGAAGGATGGAATACCAAGGACATCATTTAAAGGAGTAGTTGTTTTCAGATACCGAACAACAAGACGTGTATTCCTTGTCGGCCCAGATTCTC
TTAGGCAACTTGGGATCAAGGATGCTCGAAACATATGA
AA sequence
>Potri.009G168000.2 pacid=42772455 polypeptide=Potri.009G168000.2.p locus=Potri.009G168000 ID=Potri.009G168000.2.v4.1 annot-version=v4.1
MRRVGCDYRCLLIPAALAFFYIQMRLFVTQSKYEDRLAAAIESENHCTSQSRLLIDQISIQQGTIVSLQEQNKRQSEECRQLKALLEDLERKGLKKLVDK
VPVAAVVIMACNRADYLERTIESVLKYQSSVASKYPLFVSQDGTDPNVRSKAMSYDQLMYIQHLDSEPVHTERPGELIAYYKIARHYKWAMDQLFYKHNF
SRVIILEDDMEIAPDFFDYFEAAAALLDKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLTKSIWDELSPKWPKAYWDDWLRLKENHKGRQFI
RPEVCRTYNFGEHGSSMGQFFQQYLQPIKLNDVKVDWKSRDLSYLMKDKYTKHFADIVRKAKPIQGTDAVLKASNIEGDVRIQYKDQPDFERIARQLGIF
QEWKDGIPRTSFKGVVVFRYRTTRRVFLVGPDSLRQLGIKDARNI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Potri.009G168000
[exp]
0 1 CGL1.3
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Potri.008G112000
[exp]
3.00 0.6155
Potri.005G084100
[exp]
23.66 0.6142
AT5G04490 VTE5 vitamin E pathway gene 5 (.1) Potri.008G029000
[exp]
50.29 0.6076
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Potri.001G095600
[exp]
68.64 0.5558
AT2G45730 eukaryotic initiation factor 3... Potri.005G238200
[exp]
72.05 0.5690
AT3G57440 unknown protein Potri.006G050900
[exp]
79.46 0.5860
AT1G75160 Protein of unknown function (D... Potri.002G262400
[exp]
83.46 0.5808
AT2G20880 AP2_ERF AtERF53 ERF domain 53, Integrase-type ... Potri.013G135600
[exp]
86.32 0.5198
AT1G07710 Ankyrin repeat family protein ... Potri.007G099600
[exp]
108.74 0.5469
AT2G31900 ATMYO5, PCR11, ... MYOSIN XI F, MYOSIN 5, myosin-... Potri.001G233100
[exp]
115.31 0.5278

Potri.009G168000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.