Plant FIBer expression Database

Potri.009G168100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17250 651 / 0 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022991
[exp]
686 / 0 AT2G17250 660 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Lus10001388
[exp]
632 / 0 AT2G17250 630 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Lus10022992
[exp]
146 / 1e-40 AT2G17250 164 / 4e-48 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03914 CBF CBF/Mak21 family
Representative CDS sequence
>Potri.009G168100.1 pacid=42772461 polypeptide=Potri.009G168100.1.p locus=Potri.009G168100 ID=Potri.009G168100.1.v4.1 annot-version=v4.1
ATGGCTGCTCCTCCTCCTCCAAATCCAATCAACAAGCCAAGAAACCCTAAAAAACACAGTCTAAAAGACCTCAAAACCCTAGGTCACCAACTTCTCTCTT
CAAGAACACACATAAACAACCTCCCTCTCCTTCTCACTTACATATCCCCTAACTTTCCTCCTCAGCATGTCCTCGAATCTCTCCTCTCTCTCCACTCCTT
CTTCTCTCCTATCCTCCCCGACCTACCTTCGTCCTCCCGAAGCTCCACCCACAACAAAGACAACGACGAGCCGGACGCTGACGTTATCTATAAAACCTGG
CTTCGCTCTAAGTTCGATGAGTTTGTTAAATCTCTCGTTGATGTTGCTGTATCGCCGAAAGCTGAAGATGCTTTAAAGGAAGTTGTGTTGGATACACTAA
TGGAATTCGTCAAGACTGGAAATGGAGGGAGGTTCAATTCGGCTATTTATCACAGATTTCTTGTTAATATTGTGCAATCTACAGAATCTTTGGATTTTGT
GTTAGAGTTGCTGGCATCAAAGTATTTCAAGTACATTGATATCCGTTATTTTACTTACATCAACATTGAAAAATTTGCTAAGAATTTGGAGTTGAAAGAT
ATTTCTGATGGAAAAACTGAGAGTGGTGACAAAGTTGGTGAGAGTGATTCAAGGGAAAGCCTGGAGCTTTCTATTTACAAGATTCATTATATAATATCAA
ATATCCCTCCTCTAGAAGACCCAAAACAGAATTCTGATTATGAGCTGTGGGGTGGTTCAGGATTCTCTGTTAAAAAAGGTGAATCGAAAGGGCCTTCTCA
ACACCTGAAAACAGAAGACAAAGACCTTAAATCTGAGAAGCATGATAATGACGTTTTATCTGCTGGTAATTATGCCAAAAAGATGAAATTAAAGTTTACC
AAGGCTTGGATTTCATTTCTTAGGCTACCACTTCCAATTGATGTGTACAAGGAGGTTCTCTCCAATCTCCATCAAGCAGTCATCCCTCACCTGTCTAATC
CAATAATGTTATGTGACTTTTTGACAAGATCATATGATATTGGAGGTGTTGTCAGTGTCATGGCCCTTAGCAGTCTCTTCATCCTCATGACTAAGCATGG
TTTAGAATATCCCAACTTCTACGAAAAACTGTATGTGCTCCTCTTACCTTCCATCTTTATGGCGAAACACAGGGCAAAATTCTTTCAGCTTCTTGATTCT
TGTCTAAAGTCACCACTTCTCCCAGCATATCTGGCTGCTGCTTTTGCTAAGAAATTGAGTAGACTGGCACTTGTAGTCCCTCCTTCTGGAGCATTGGTTA
TTATTGCATTGATTCACAACCTCCTCAGGAGACATCCTTCAATCAACTGTTTGGTGCACCAGGAAGACTGTAATGATACTACAGACAACAATTCCGAAGC
AGAAGGGGGAGATAATGAAAATGAATTTGGGGCTAGCACAAATATTGCAGCCAGAAAAGCTGGCATCGATCATTTTGACAATGAGGAAAGCAACCCCTTA
AAGTCCCATGCCTTGGGAAGCTCTCTATGGGAAATTGATAGCCTTCGTCACCACTACTGCCCTCCTGTTTCAAGGTTTGTCCAGTCACTTGAGAATGACT
TGACAGTCAGGGCCAAAACCACTGAAGTTAATGTTGAGGATTTTAGTTCTGGCTCATATGCGACCATATTTGGAGAGGAGATTAGACGAAGGGTGAAACA
GGTGCCAGTGGCGTTCTACAAAGCAATTCCAACCTCTTTGTTTTCGGAGACTGATTTTAGTGGATGGAGCTTTAAAGAGGAGGAGGAAAGCAAGGGAAAG
AAATCTGAAAACGGTATCTTAAACTCATCGGGAGACAAGGATGGATGTTGCACAAAACGACAGCGGGTAGAGTGCTAA
AA sequence
>Potri.009G168100.1 pacid=42772461 polypeptide=Potri.009G168100.1.p locus=Potri.009G168100 ID=Potri.009G168100.1.v4.1 annot-version=v4.1
MAAPPPPNPINKPRNPKKHSLKDLKTLGHQLLSSRTHINNLPLLLTYISPNFPPQHVLESLLSLHSFFSPILPDLPSSSRSSTHNKDNDEPDADVIYKTW
LRSKFDEFVKSLVDVAVSPKAEDALKEVVLDTLMEFVKTGNGGRFNSAIYHRFLVNIVQSTESLDFVLELLASKYFKYIDIRYFTYINIEKFAKNLELKD
ISDGKTESGDKVGESDSRESLELSIYKIHYIISNIPPLEDPKQNSDYELWGGSGFSVKKGESKGPSQHLKTEDKDLKSEKHDNDVLSAGNYAKKMKLKFT
KAWISFLRLPLPIDVYKEVLSNLHQAVIPHLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTKHGLEYPNFYEKLYVLLLPSIFMAKHRAKFFQLLDS
CLKSPLLPAYLAAAFAKKLSRLALVVPPSGALVIIALIHNLLRRHPSINCLVHQEDCNDTTDNNSEAEGGDNENEFGASTNIAARKAGIDHFDNEESNPL
KSHALGSSLWEIDSLRHHYCPPVSRFVQSLENDLTVRAKTTEVNVEDFSSGSYATIFGEEIRRRVKQVPVAFYKAIPTSLFSETDFSGWSFKEEEESKGK
KSENGILNSSGDKDGCCTKRQRVEC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Potri.009G168100
[exp]
0 1
AT2G17410 ARID ARID/BRIGHT DNA-binding domain... Potri.004G208900
[exp]
1.73 0.8940
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.012G059300
[exp]
2.44 0.8904
AT1G20300 Pentatricopeptide repeat (PPR)... Potri.005G245400
[exp]
3.46 0.8868
AT1G59760 AtMTR4 homolog of yeast MTR4, RNA hel... Potri.004G228700
[exp]
4.69 0.8906
AT4G31520 SDA1 family protein (.1) Potri.008G182900
[exp]
7.07 0.8839
AT5G07900 Mitochondrial transcription te... Potri.001G034933
[exp]
8.83 0.8331
AT3G10530 Transducin/WD40 repeat-like su... Potri.008G029100
[exp]
9.79 0.8737
AT2G43650 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U... Potri.013G125800
[exp]
11.83 0.8753
AT4G39680 SAP domain-containing protein ... Potri.007G086900
[exp]
16.73 0.8619
AT3G44600 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 ... Potri.009G146400
[exp]
16.97 0.8717

Potri.009G168100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.