Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17265 473 / 1e-167 DMR1, HSK DOWNY MILDEW RESISTANT 1, homoserine kinase (.1) AT4G35295 76 / 7e-17 homoserine kinase, putative / HSK, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207000 [exp] 609 / 0 AT2G17265 452 / 1e-159 DOWNY MILDEW RESISTANT 1, homoserine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001387 [exp] 352 / 5e-121 AT2G17265 335 / 2e-114 DOWNY MILDEW RESISTANT 1, homoserine kinase (.1) Lus10022990 [exp] 332 / 9e-113 AT2G17265 357 / 2e-122 DOWNY MILDEW RESISTANT 1, homoserine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence Show only first row Show all	>Potri.009G168400.1 pacid=42772649 polypeptide=Potri.009G168400.1.p locus=Potri.009G168400 ID=Potri.009G168400.1.v4.1 annot-version=v4.1 ATGGCAATATGTTGTTTTCCATCTCCTTTGAAACCTATGACCCCAGCAACTCCATTAACAAATCTTAAACCCAAAAGACCAGACATCCTTCGCTGTAACT TCTCTCTGCCCACCATCACAACCACCGAACCCGAGCCCGTTTTCACATCCGTCAGATCCTTCGCACCTGCTACAGTCGCCAACCTTGGCCCTGGCTTTGA TTTCCTTGGATGCGCCGTCGATGGCCTCGGCGACTTCGTCTCTCTCCGTGTCGACCCCTCTGTCCACCCCGGCGAGCTCTCCATCTCCGATATTTCGGGC CCCAAAAAGCTCTCCAAAAACCCACTCTATAACTGTGCTGGCATCGCTGCTATCGCCACCATGAAAATGCTCAACATTCGCTCTGTGGGTCTCTCTCTTT CCCTCGAAAAGGGCCTTCCTTTAGGATCCGGACTCGGGTCCAGCGCTGCCAGTGCTGCGGCGGCGGCTGTGGCTGTGAATGAGCTGTTTGGAAGAAAATT GGAGGTGAAAGATTTAGTCTTGGCTGGATTGGAATCAGAAGCTAAAGTTTCAGGTTACCATGCTGATAATATAGCGCCAGCAATAATGGGTGGTTTTGTT TTGATTAGAAGTTATGATCCGCTAGAGTTAATGAGTTTACAATTCCCAGTTGAAAAAGATTTGATCTTTGTGCTTGTTAGTCCTGATTTTGAAGCACCAA CTAAGAAAATGAGGGCCGCATTGCCTGCTGAAATAGGGATGCCACACCATGTGTGGAATTGTAGTCAAGCTGGGGCTTTTGTGGCTTCAGTGTTGCAAGG GGATTTGGTGGGACTGGGGAAGGCATTGTCAAGTGATAAAATTGTGGAGCCTAAAAGGGCTCCCTTGATTCCTGGGATGGAAGGGGTTAAGAAGGCGGCT CTAGAGGCAGGAGCTTTTGGATGTACAATTAGTGGGGCGGGGCCAACAGCGGTGGCAGTGGTGGACAGCGAGGAGAGAGGAGTGGAGATTGGGGAGAGAA TGGTGGAGACTTTTTGGAAAGAAGGCAAACTGAAGGCTGTTGCTTCGGTTAAGAGGTTGGATAGAGTTGGTGCTAGACTTGTTGGTAGTGTTCCTAGATG A
AA sequence Show only first row Show all	>Potri.009G168400.1 pacid=42772649 polypeptide=Potri.009G168400.1.p locus=Potri.009G168400 ID=Potri.009G168400.1.v4.1 annot-version=v4.1 MAICCFPSPLKPMTPATPLTNLKPKRPDILRCNFSLPTITTTEPEPVFTSVRSFAPATVANLGPGFDFLGCAVDGLGDFVSLRVDPSVHPGELSISDISG PKKLSKNPLYNCAGIAAIATMKMLNIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNELFGRKLEVKDLVLAGLESEAKVSGYHADNIAPAIMGGFV LIRSYDPLELMSLQFPVEKDLIFVLVSPDFEAPTKKMRAALPAEIGMPHHVWNCSQAGAFVASVLQGDLVGLGKALSSDKIVEPKRAPLIPGMEGVKKAA LEAGAFGCTISGAGPTAVAVVDSEERGVEIGERMVETFWKEGKLKAVASVKRLDRVGARLVGSVPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Potri.009G168400 [exp]	0	1
AT2G17030			F-box family protein with a do...		Potri.001G277400 [exp]	28.98	0.6979
AT1G73940			unknown protein		Potri.001G453400 [exp]	31.12	0.6901
AT5G07900			Mitochondrial transcription te...		Potri.003G190300 [exp]	80.53	0.6703
					Potri.011G155300 [exp]	94.56	0.6754
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	167.24	0.6176
AT1G47578			Biotin/lipoate A/B protein lig...		Potri.002G131000 [exp]	204.08	0.6284

Compare expression of checked genes

Potri.009G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.