Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17270 49 / 2e-08 PHT3;3 phosphate transporter 3;3 (.1) AT5G14040 41 / 7e-06 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 40 / 1e-05 PHT3;2 phosphate transporter 3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207200 [exp] 67 / 3e-15 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.001G322300 [exp] 42 / 4e-06 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.005G098800 [exp] 42 / 4e-06 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.017G060800 [exp] 42 / 5e-06 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 40 / 2e-05 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 39 / 3e-05 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016686 [exp] 43 / 1e-06 AT2G17270 57 / 1e-16 phosphate transporter 3;3 (.1) Lus10012574 [exp] 43 / 2e-06 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10041519 [exp] 43 / 2e-06 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10035975 [exp] 42 / 5e-06 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10036014 [exp] 41 / 9e-06 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 41 / 9e-06 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10026554 [exp] 40 / 2e-05 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 37 / 0.0003 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G168550.1 pacid=42771084 polypeptide=Potri.009G168550.1.p locus=Potri.009G168550 ID=Potri.009G168550.1.v4.1 annot-version=v4.1 ATGAAGGAAATGAAAGGGCGGAGTAGTCTCGTGGACGAGTTCTCACCGGCCTTTTATGGACTCTGCACTGTTGGAGGAATCATCAGTGCTGGTACTACTC CCCTTGCCATCACTCATGATGTTTTTAAAGTCAATATGCAGGCTTTTCATTCTGGAAAAGGGGGAGTATGGAGCTTGTATTGCTAG
AA sequence Show only first row Show all	>Potri.009G168550.1 pacid=42771084 polypeptide=Potri.009G168550.1.p locus=Potri.009G168550 ID=Potri.009G168550.1.v4.1 annot-version=v4.1 MKEMKGRSSLVDEFSPAFYGLCTVGGIISAGTTPLAITHDVFKVNMQAFHSGKGGVWSLYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.009G168550 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.007G125200 [exp]	6.24	0.8448
					Potri.001G194901 [exp]	8.00	0.8120
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.008G108201 [exp]	10.19	0.8092
					Potri.008G139375 [exp]	10.24	0.8113
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.013G061100 [exp]	14.45	0.7676
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.008G082301 [exp]	20.12	0.8068
AT3G28360		ABCB16, PGP16	ATP-binding cassette B16, P-gl...		Potri.001G417801 [exp]	21.21	0.7682
AT5G24490			30S ribosomal protein, putativ...		Potri.012G026375 [exp]	24.37	0.8066
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.014G195300 [exp]	24.97	0.7861
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.012G087000 [exp]	26.66	0.7922

Compare expression of checked genes

Potri.009G168550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.