Plant FIBer expression Database

Potri.009G168700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G207400
[exp]
52 / 5e-08 AT4G38225 397 / 8e-138 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G168700.1 pacid=42771669 polypeptide=Potri.009G168700.1.p locus=Potri.009G168700 ID=Potri.009G168700.1.v4.1 annot-version=v4.1
ATGATGGGCTCGGGCATATTAGAAGTGAGATATGGATTCAAGCGCGTTGTTTGGATTCAAGTATATGGGGCGTGTACCCAAGCTCGAGCCCACGATGGTG
CTGGGATGTACACCCATGCTGGCCCTACACCCTACACGGCTGAGTGTAGTGTCCTTGGCTCCCTTGTTGTACTTTGGGTCTTGATTCAAGAACTAATCGA
TGACAAGGTGTGGAAGACAGTTAGAGACGAACATGATCTCATTTCGCTTCCCATGCAATTGTGGAGTTCACTAGAAGGAAACAAAGGTGGTCACAAATAC
AGATTAAAAGGAACATGTAGCATTGGAAGATTTTCGTTGTTGATCAATTTTGACAATTACTTTCAAGTACAAGGACCAATTTCTGCTTTTCAATCCATCA
TGCAAGACTCTATAATTGGCACAGATGGGGTTAACCCCAAGTCATTAGCATGCTGTGATAGTGTGATGTTTTTCAACCTGGGGTTCAGCAATGCCTGGAG
TATGAAAATGAAACTTAAGATCCTCGTTCTTCAAAAATCAACAAACAGAGTGCTTAAATAA
AA sequence
>Potri.009G168700.1 pacid=42771669 polypeptide=Potri.009G168700.1.p locus=Potri.009G168700 ID=Potri.009G168700.1.v4.1 annot-version=v4.1
MMGSGILEVRYGFKRVVWIQVYGACTQARAHDGAGMYTHAGPTPYTAECSVLGSLVVLWVLIQELIDDKVWKTVRDEHDLISLPMQLWSSLEGNKGGHKY
RLKGTCSIGRFSLLINFDNYFQVQGPISAFQSIMQDSIIGTDGVNPKSLACCDSVMFFNLGFSNAWSMKMKLKILVLQKSTNRVLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G168700
[exp]
0 1
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G130600
[exp]
2.82 0.9043
AT1G60560 SWIM zinc finger family protei... Potri.006G245800
[exp]
12.04 0.7835
AT1G30290 Tetratricopeptide repeat (TPR)... Potri.011G082300
[exp]
18.33 0.8931
AT3G55870 ADC synthase superfamily prote... Potri.008G066600
[exp]
18.57 0.9006 Pt-ASA1.1,ASA%2C,pseudogene
AT3G47930 ATGLDH "L-galactono-1,4-lactone dehyd... Potri.006G043232
[exp]
20.83 0.7345
AT1G53903 Protein of unknown function (D... Potri.003G071900
[exp]
26.53 0.7615
Potri.014G163733
[exp]
30.19 0.8920
AT5G11390 WIT1 WPP domain-interacting protein... Potri.004G111350
[exp]
34.05 0.8906
AT5G20940 Glycosyl hydrolase family prot... Potri.009G154032
[exp]
35.72 0.8903
AT4G10950 SGNH hydrolase-type esterase s... Potri.003G141300
[exp]
41.71 0.8865

Potri.009G168700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.