Plant FIBer expression Database

Potri.009G169000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35360 596 / 0 Uncharacterised conserved protein (UCP030210) (.1)
AT2G17340 578 / 0 Uncharacterised conserved protein (UCP030210) (.1)
AT2G17320 550 / 0 Uncharacterised conserved protein (UCP030210) (.1)
AT4G32180 180 / 5e-50 ATPANK2 pantothenate kinase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G207700
[exp]
640 / 0 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Potri.012G081600
[exp]
186 / 2e-52 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3)
Potri.015G077300
[exp]
178 / 2e-49 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013846
[exp]
586 / 0 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Lus10026563
[exp]
523 / 0 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Lus10009520
[exp]
188 / 7e-53 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3)
Lus10020341
[exp]
114 / 2e-27 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01937 DUF89 Protein of unknown function DUF89
Representative CDS sequence
>Potri.009G169000.1 pacid=42772010 polypeptide=Potri.009G169000.1.p locus=Potri.009G169000 ID=Potri.009G169000.1.v4.1 annot-version=v4.1
ATGGAGAGCGAATCAGAGATGGTAGCCTTCCCGTTGCTATTGACGCCGATCGAATCCAATTACAGAGCTTGCACCATTCCTTACCGCTTCCCCTCAGACA
ATCCTAAGAAACCAACCCCTACCGAGCTCCAATGGATCGACCTCTTTCTCAATTCCATTCCCTCCTTCAAGAAGCGTGCTGAAAGTGATCCTACTGTTCC
TGATGCCCCTGTCAGAGCTGAAAAATTTGCTCAGAGATATGGTGATGTACTGGAGGACTTTAAGAAAGATCCGGAAAGCCATGGTGGCCCTCCTGATTGC
ATTCTTCTCTGCAGACTGCGGGAGATAATCCTTAGAGAGTTGGGATTTATAGACATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCTATATCAC
TATTTAAGGATGTAGTTCAGCTTAATGATGCTATTGAAGATGAGCCCAAGCGCCTAGAAAATCTTGTCAGAGGAATATTTGCTGGGAATATCTTCGACCT
CGGTTCTGCAGAGCTTGCTGAGGTTTTCTCAAAGGATGGAATGTCCTTTTTAGCTAGTTGTCAAAATCTTGTCCCTCGACCCTGGGTCATTGATGACTTG
GACGCCTTTAAAGTGAAATGGAGCAAGAAATCATGGAAAAAGGTTGTCATCTTTGTTGATAATTCCGGTGCAGATATAATTTTGGGTATTTTGCCCTTTG
CAAGAGAGCTACTGCGGCATGGAACTCAGGTTGTGTTGGCTGCCAATGACATGCCTTCCATCAATGATGTCACTTACACTGAACTGATAGAGATTATAGC
AAAGTTGAAGGATGAAAACGGACAGCTTATGGGTGTCAACACGTCAAATCTTTTGATAGCCAATTCTGGAAATGATTTGCCGGTTATTGATCTTTCAAGA
GTATCCCAAGTGCTAGCCTATCTAGCAAGTGATGCAGACCTAGTAGTATTGGAAGGAATGGGCCGTGGGATAGAGACAAATCTTTATGCTCAGTTTAAAT
GCGACTCTCTCAAGATTGGGATGGTGAAACATCCAGAGGTTGCTCAGTTCCTTGGGGGACGGCTTTATGATTGTGTTTTCAAGTACAATGAAGTCGTGAG
TTAA
AA sequence
>Potri.009G169000.1 pacid=42772010 polypeptide=Potri.009G169000.1.p locus=Potri.009G169000 ID=Potri.009G169000.1.v4.1 annot-version=v4.1
MESESEMVAFPLLLTPIESNYRACTIPYRFPSDNPKKPTPTELQWIDLFLNSIPSFKKRAESDPTVPDAPVRAEKFAQRYGDVLEDFKKDPESHGGPPDC
ILLCRLREIILRELGFIDIFKKVKDEENAKAISLFKDVVQLNDAIEDEPKRLENLVRGIFAGNIFDLGSAELAEVFSKDGMSFLASCQNLVPRPWVIDDL
DAFKVKWSKKSWKKVVIFVDNSGADIILGILPFARELLRHGTQVVLAANDMPSINDVTYTELIEIIAKLKDENGQLMGVNTSNLLIANSGNDLPVIDLSR
VSQVLAYLASDADLVVLEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35360 Uncharacterised conserved prot... Potri.009G169000
[exp]
0 1
AT5G59910 HTB4 Histone superfamily protein (.... Potri.008G030400
[exp]
1.41 0.8693
AT4G38460 GGR geranylgeranyl reductase (.1) Potri.004G179628
[exp]
7.87 0.8374
AT2G46580 Pyridoxamine 5'-phosphate oxid... Potri.002G173800
[exp]
15.29 0.8039
AT1G57790 F-box family protein (.1) Potri.006G212600
[exp]
17.74 0.8149
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Potri.006G124100
[exp]
24.49 0.7571
AT4G17960 unknown protein Potri.001G143600
[exp]
26.83 0.7815
AT1G55510 BCDH BETA1, BCD... branched-chain alpha-keto acid... Potri.003G222800
[exp]
33.49 0.8129
AT4G29960 unknown protein Potri.018G143000
[exp]
36.98 0.7925
AT4G12240 C2H2ZnF zinc finger (C2H2 type) family... Potri.003G114700
[exp]
39.11 0.7998
AT3G46580 MBD05, MDB5, MD... METHYL-CPG-BINDING DOMAIN PROT... Potri.009G031100
[exp]
39.19 0.7758 MBD5.2,MBD904

Potri.009G169000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.