Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38220 646 / 0 AQI aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) AT1G44820 526 / 0 Peptidase M20/M25/M40 family protein (.1) AT1G44180 523 / 0 Peptidase M20/M25/M40 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208100 [exp] 791 / 0 AT4G38220 635 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.002G085500 [exp] 531 / 0 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.002G085400 [exp] 524 / 0 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026565 [exp] 677 / 0 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10013848 [exp] 626 / 0 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10042502 [exp] 522 / 0 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10038151 [exp] 511 / 1e-179 AT1G44820 622 / 0.0 Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.009G169300.1 pacid=42770728 polypeptide=Potri.009G169300.1.p locus=Potri.009G169300 ID=Potri.009G169300.1.v4.1 annot-version=v4.1 ATGGAGACACCCTTCAAAAACCATCATCTCCTCCTCCTCTCCGTGCTTCTACTAATCCTTATAAATCATCCATCGGAAGGGGAAGCCGAAGATGCAGCAA TCATATCAAGATTCCAACAATACCTTCAGATCAACACTGCACAACCCACCCCTCAATACCAACAATCAGCTGACTTTCTCATCTCCCAAGCCAAATTCAT CGGCCTCGAATCCCAATCTATCGAATTTGTCCAAAACAAGCCACTCATCCTCCTCAAATGGCCTGGATCTGACCCGACTCTCCCTTCGATCCTTCTCAAC TCACACACAGATGTCGTCCCAGTGGAACACCACAAGTGGACTCATCATCCTTTTGGCGCCCATGTTGATTCTCATGGTAATATCTTTGCTAGAGGGTCTC AGGACATGAAGTGCGTTGGTATGCAGTACTTGGAAGCTATTCGTCGCTTGAAGTCTTCTGGGTTTGTCCCACTTCGTTCTGTTTACTTATCCTTTGTCCC TGATGAAGAAATCGGTGGCCATGATGGTGCTGCGAAGTTTGCCGACTCTGATATCTTTAACAGTATGAATGTTGGCATAGTACTTGATGAAGGGTTGGCA TCACCGGACGAGAATTACAGGACATTTTATGCGGAGAGGTGTCCTTGGTGGATGGTGATTAAGGCTACTGGGGCACCAGGACATGGAGCTAAATTGTATG ATAATAGTGCTATGGAGAATCTTTTGAAAAGTATTGAGAGTGTGAGGAGGTTTAGAGCTTCTCAGTTTGATTTGGTGAAGGCTGGCTTGAAAGCTGAAGG AGAGGTCATATCTGTGAACATGGTCTTTCTTAAGGCTGGCACTCCTTCTCCTACTGGATTTGTCATGAATTTGCAGCCATCTGAAGCAGAAGCAGGTTTT GATATTCGAGTCCCACCAACTGCAGATCCAGAATCTTTGGAGAGACGAATTGCAGAAGAGTGGGCTCCTGTTTCACGTAATATGACATTCCAGTTTAAGC AGCAAGTTTCAATACATGATAAGTCTGTGAGGCCAGTAGTTACGAAGACTGACAGTTCTAATCCATGGTGGAGCCTGCTTGAGGAAGCTGTCAGAAAAGC TAATGGAAAACTTGGTAAGCCAGAGATCTTTCCTGCGTCAACTGACGCTCGCTACTTTCGGCAACTAGGCCTGCCAGCAATTGGCTTCTCTCCGATGGCC AACACACCTATACTACTGCATGACCACAATGAGTTCCTGAACCAAGACGAATACCTGAAAGGCATCCATATTTATGAGGCAATAATTAAAGCTTATGCAT CTTACATCGAGCACACAAGCGATGGAAGCACAAGAGATGAGTTGTGA
AA sequence Show only first row Show all	>Potri.009G169300.1 pacid=42770728 polypeptide=Potri.009G169300.1.p locus=Potri.009G169300 ID=Potri.009G169300.1.v4.1 annot-version=v4.1 METPFKNHHLLLLSVLLLILINHPSEGEAEDAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGSDPTLPSILLN SHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRLKSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLA SPDENYRTFYAERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVISVNMVFLKAGTPSPTGFVMNLQPSEAEAGF DIRVPPTADPESLERRIAEEWAPVSRNMTFQFKQQVSIHDKSVRPVVTKTDSSNPWWSLLEEAVRKANGKLGKPEIFPASTDARYFRQLGLPAIGFSPMA NTPILLHDHNEFLNQDEYLKGIHIYEAIIKAYASYIEHTSDGSTRDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.009G169300 [exp]	0	1
AT5G09995			unknown protein		Potri.007G081800 [exp]	1.00	0.9151
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.008G037700 [exp]	4.69	0.8843
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	6.00	0.8828
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G158200 [exp]	7.00	0.8617
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	10.39	0.8536
					Potri.010G065733 [exp]	13.41	0.8664
AT2G30120			unknown protein		Potri.001G281400 [exp]	16.73	0.8613
AT1G13690		ATE1	ATPase E1 (.1)		Potri.008G097500 [exp]	17.34	0.8095	ATE1.2
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	18.70	0.8479
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	19.74	0.8503

Compare expression of checked genes

Potri.009G169300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.