Plant FIBer expression Database

Potri.009G169400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G208200
[exp]
304 / 8e-107 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G169400.1 pacid=42772348 polypeptide=Potri.009G169400.1.p locus=Potri.009G169400 ID=Potri.009G169400.1.v4.1 annot-version=v4.1
ATGGAGGAGTGCATGAGAAAGCTAGCTCTATGGCACACTCGAACATTCAGTCCCGTTATGACTCACGAAGAGCTTGAGCCCATCATGATCACCATGGGCT
TCGTGGGCCTCCCCCCTTCCTCCCCCTCCGCGTCTTCCTCGTGGAAGGTGTACGCTTACATGGCTAAGCCGCCTAATTACAAGTACCACTACGACCAAGC
GGAGGAGCAGTCTGTAGCTCCGCTGCGGCCCAAGCTGCCTTACCCTAAGATAGATGGCCTCCACCTATACACTTACCAGGCTTTCATCGACGCCGTTAAC
TTCTACCTCGAGATGTCTGATATCTCCGACCTCTTCCACATTAGGGGGATGCCGCTTTATCGGAATGTGGACAGAAGTAGAAAGTGGCGTCGAATGGAGG
ACGACGAGAGTGTGTTTGTTTACAGAGAGGGGACTCTTGAGCAAACAACATACCATCTTTATCATGCCGACAAGTCGGGCAATGAAGATGATTCTGTGCT
TATTCGTGTCAAGGGCAAGAGTGCTCCTATCACCTGCATTGTCCCCCTGAAGGACATCATAGTAGCATGA
AA sequence
>Potri.009G169400.1 pacid=42772348 polypeptide=Potri.009G169400.1.p locus=Potri.009G169400 ID=Potri.009G169400.1.v4.1 annot-version=v4.1
MEECMRKLALWHTRTFSPVMTHEELEPIMITMGFVGLPPSSPSASSSWKVYAYMAKPPNYKYHYDQAEEQSVAPLRPKLPYPKIDGLHLYTYQAFIDAVN
FYLEMSDISDLFHIRGMPLYRNVDRSRKWRRMEDDESVFVYREGTLEQTTYHLYHADKSGNEDDSVLIRVKGKSAPITCIVPLKDIIVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G169400
[exp]
0 1
AT1G33540 SCPL18 serine carboxypeptidase-like 1... Potri.001G290900
[exp]
20.39 0.7696
AT5G47580 ASG7 ALTERED SEED GERMINATION 7, un... Potri.003G110700
[exp]
24.00 0.7384
Potri.006G222400
[exp]
24.49 0.6885
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.014G014100
[exp]
31.85 0.7442
AT2G16070 PDV2 plastid division2 (.1.2) Potri.004G149900
[exp]
38.65 0.7430
AT4G39150 DNAJ heat shock N-terminal dom... Potri.004G158300
[exp]
42.89 0.7419
AT4G27510 unknown protein Potri.004G133900
[exp]
60.09 0.7237
AT1G07870 Protein kinase superfamily pro... Potri.001G234100
[exp]
83.78 0.7179
AT4G32640 Sec23/Sec24 protein transport ... Potri.002G082900
[exp]
91.53 0.7131
AT2G01150 RHA2B RING-H2 finger protein 2B (.1) Potri.008G125700
[exp]
107.14 0.7114 RHA2.1

Potri.009G169400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.