Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrEXPA21,ATEXPA20.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38210 335 / 6e-117 ATHEXPALPHA1.23, ATEXP20, ATEXPA20 EXPANSIN 20, expansin A20 (.1) AT2G39700 259 / 2e-87 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 259 / 4e-87 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G02260 256 / 4e-86 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G03220 256 / 8e-86 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT3G55500 254 / 4e-85 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G03090 247 / 1e-82 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 246 / 8e-82 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G05290 244 / 4e-81 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 242 / 2e-80 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208300 [exp] 485 / 5e-175 AT4G38210 357 / 2e-124 EXPANSIN 20, expansin A20 (.1) Potri.008G057100 [exp] 264 / 4e-89 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.009G031800 [exp] 264 / 6e-89 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 263 / 2e-88 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.010G202500 [exp] 257 / 2e-86 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.004G080200 [exp] 255 / 2e-85 AT3G03220 409 / 8e-146 EXPANSIN 13, expansin A13 (.1) Potri.008G088300 [exp] 254 / 3e-85 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 251 / 1e-83 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.006G086100 [exp] 249 / 5e-83 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026566 [exp] 311 / 1e-107 AT4G38210 288 / 1e-98 EXPANSIN 20, expansin A20 (.1) Lus10013849 [exp] 302 / 5e-104 AT4G38210 279 / 7e-95 EXPANSIN 20, expansin A20 (.1) Lus10040801 [exp] 263 / 8e-89 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 263 / 2e-88 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040286 [exp] 256 / 8e-86 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10024388 [exp] 255 / 2e-85 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10023407 [exp] 254 / 3e-85 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10010454 [exp] 253 / 2e-84 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10034227 [exp] 251 / 6e-84 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10039009 [exp] 251 / 1e-83 AT3G03220 412 / 7e-147 EXPANSIN 13, expansin A13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.009G169500.1 pacid=42772841 polypeptide=Potri.009G169500.1.p locus=Potri.009G169500 ID=Potri.009G169500.1.v4.1 annot-version=v4.1 ATGGGTGCTCTAAAAGCCATTCTTCTCTACTTGATTATACACCAAACATGGAAGATCACAGCTGATGATGAGGAATGGAAGTCTGCTACTGCAACATACG TTAAGGAGACAAGTGGATCCATCATTGTAGAAGGTGCTTGTGGGTATGGGGACCTTCACAGGGCCACCTATGGAAAATACAGTGCTGGACTAAGTAGCAT GCTGTTCAACAGAGGGAGTACCTGTGGGGCTTGCTTCGAGGTCAGATGTGTAGACCACATCTTATGGTGCCTGCAGGGTAGCCCCTCCGTCATTCTCACT GCAACAGATTTCTGCCCTCCAAATTACGGGCTTTCATCGGATTATGGTGGCTGGTGTAATTTCCCCAAAGAACACTTTGACATGTCAGAAGCGGCATTTG CTGAAATCGCAGAGAAAAAGGCTGATGTTGTGCCAGTTCAACACAGAAGGGTGAAGTGTGATAGAAGGGGTGGGCTAAGATTCACAATGAGTGGAAATTT TCACTTTTATCAAGTACTCATCAGCAATGTGGGATTGGATGGTGAGGTGATTGCTGTGAAAGTGAAGGGATCAAGAACAGCGTGGATACCTATGGCAAGA AACTGGGGACAAAACTGGCAATCCAATATCAACCTTATTGGACAGCCTCTATCTTTCGAGGTGACTACCAGCAGCAGAAGAACACTCACATCTTACAATG TTGCACCAGCAAACTGGCAATTTGGCCAGATATTTGAAGGCAAGCAATTCTAG
AA sequence Show only first row Show all	>Potri.009G169500.1 pacid=42772841 polypeptide=Potri.009G169500.1.p locus=Potri.009G169500 ID=Potri.009G169500.1.v4.1 annot-version=v4.1 MGALKAILLYLIIHQTWKITADDEEWKSATATYVKETSGSIIVEGACGYGDLHRATYGKYSAGLSSMLFNRGSTCGACFEVRCVDHILWCLQGSPSVILT ATDFCPPNYGLSSDYGGWCNFPKEHFDMSEAAFAEIAEKKADVVPVQHRRVKCDRRGGLRFTMSGNFHFYQVLISNVGLDGEVIAVKVKGSRTAWIPMAR NWGQNWQSNINLIGQPLSFEVTTSSRRTLTSYNVAPANWQFGQIFEGKQF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.009G169500 [exp]	0	1	PtrEXPA21,ATEXPA20.1
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.002G145750 [exp]	6.16	0.7109
AT1G64890			Major facilitator superfamily ...		Potri.013G076300 [exp]	7.74	0.7255
AT4G39230			NmrA-like negative transcripti...		Potri.007G036500 [exp]	17.54	0.7569	PCBER5
AT4G33625			unknown protein		Potri.007G115800 [exp]	20.00	0.7098
AT1G32583			unknown protein		Potri.015G101000 [exp]	20.49	0.7351
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105100 [exp]	21.33	0.7255
AT2G04031			Protein of unknown function (D...		Potri.009G104800 [exp]	26.45	0.7495
AT2G33020		AtRLP24	receptor like protein 24 (.1)		Potri.011G141100 [exp]	29.83	0.7322
					Potri.019G017739 [exp]	31.74	0.6919
					Potri.001G132850 [exp]	33.54	0.6855

Compare expression of checked genes

Potri.009G169500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.