Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64050 922 / 0 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1) AT5G26710 64 / 1e-10 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT1G25350 51 / 2e-06 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G001200 [exp] 69 / 5e-12 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 68 / 1e-11 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.010G122866 [exp] 54 / 1e-07 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.008G122200 [exp] 54 / 2e-07 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022659 [exp] 899 / 0 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10012512 [exp] 890 / 0 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10026044 [exp] 66 / 4e-11 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10014335 [exp] 63 / 5e-10 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10034339 [exp] 54 / 5e-07 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10041433 [exp] 52 / 1e-06 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00749 [poplar] [flax] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.009G169700.1 pacid=42771218 polypeptide=Potri.009G169700.1.p locus=Potri.009G169700 ID=Potri.009G169700.1.v4.1 annot-version=v4.1 ATGGCGAATAGTATCATAGCAGGGACGCCATGGATGAGAATCAGGGTTATCCCTGAAATTTCGTTTCCCATTCTACGTTCTTCATCCTCCCTTTACAACC ACAAAGTCTCTTTCCTTTTTCCAACTAGAAGACGATTTTCAGTCTCTGCCATTGCTAGTACTGAAAAAGAACAGGTTAGAGTCCGTTTTGCTCCCTCGCC TACTGGAAACCTCCATGTTGGTGGTGCTAGAACTGCTCTCTTTAATTATCTCTTTGCTAGGTCTAAAGGTGGGAAATTTGTGTTGAGGATTGAGGATACT GACTTGGAGAGGTCGACTAAAGAATCCGAGGAGGCAGTGCTTCGGGATCTTTCTTGGCTTGGTCTTGACTGGGATGAAGGTCCTGGGGTTGGTGGAGACT ATGGTCCATATCGGCAATCAGAGAGGAATTCTCTCTATAAGCAGCATGCTGAGAAACTTGTAGAATCTGGTCATGTTTATCGCTGCTTCTGCTCTAATGA GGAACTTGAGCAAATGAAGGAGATTGCAAAATTGAAGCAACTGCCTCCAGTATACACAGGAAAGTGGGCTAATGCAATGGATGATGAAGTACAGGAAGAG CTGGCAAAGGGAACTCCATACACTTATAGATTTCGTGTGCCTAAGGAAGGGCGTTTGACAATTAATGATCTTATTCGGGGCGAGGTTAGTTGGAATTATG ACACACTTGGAGATTTTGTGATCATGAGGAGCAATGGACAACCTGTGTACAACTTTTGTGTCACTGTTGATGATGCTACCATGGCTATCTCACATGTTAT CAGAGCTGAAGAGCATTTACCAAATACTCTCAGGCAAGCACTAATATACAAGGCCCTTGGATTCCCCATGCCTCACTTTGCACATGTTTCTTTAATTCTT GCACCTGATAGAAGTAAATTATCAAAACGACATGGTGCAACTTCAGTGGGTCAGTATAGGGAGATGGGTTATCTGCCCCGGGCAATGGTGAATTACTTGG CACTTTTAGGTTGGGGTGATGGAACAGAAAATGAATTTTTTACCCTTGAGCAACTTGTTGAAAAATTCTCAATTGGTCGTGTTAACAAAAGCGGCGCTGT TTTTGATTCTACCAAGTTGAGGTGGATGAATGGCCAGCATTTAAGAGCACTTCCATCAGATAAACTGAACAAACTTGTTGGTGAACGCTGGAAAAGCAGT GGCATTCTCGTAGAGTCAGAAGGACCATTTATAGAAGAGGCAGTTCTGCTTCTCAAGGATGGGATTGAGCTGGTAACTGATTCAGACAAAGTGCTCTCAA ATTTGCTATCATATCCCTTACATGCTACTTTATCAAGTCCTGAAGGTAAAGTTATGATACAAAATAAGCTTTCTGAGGTCTCATCCGGGTTGTTAGCTGC ATATGACAGTGGCGAACTCCTTAATGCCCTGGAAGAAGGCCATTCTGGTTGGCAGAAGTGGGTAAAGAATTTTGGAAAAACAATGAAGCTGAAGGGGAAA TCTCTTTTCATGCCTCTCCGAGTGTTGCTAACTGGAAAACTCCACGGTCCTGACATGGGCTCTAGCATAATCCTGCTCCATCAAGCTGGAACTGGGGATA TGGTTTCTTCCCAAGCTGAGTTTGTGACATTGAAGGAGAGGTTTGGAGTACTGAGGGAAATAGACTGGGAAGCACTGAACAAGGATCAACCTCCTTTGGA ACCCGCAGCTATAGCAGCAAATTGA
AA sequence Show only first row Show all	>Potri.009G169700.1 pacid=42771218 polypeptide=Potri.009G169700.1.p locus=Potri.009G169700 ID=Potri.009G169700.1.v4.1 annot-version=v4.1 MANSIIAGTPWMRIRVIPEISFPILRSSSSLYNHKVSFLFPTRRRFSVSAIASTEKEQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT DLERSTKESEEAVLRDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQHAEKLVESGHVYRCFCSNEELEQMKEIAKLKQLPPVYTGKWANAMDDEVQEE LAKGTPYTYRFRVPKEGRLTINDLIRGEVSWNYDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPHFAHVSLIL APDRSKLSKRHGATSVGQYREMGYLPRAMVNYLALLGWGDGTENEFFTLEQLVEKFSIGRVNKSGAVFDSTKLRWMNGQHLRALPSDKLNKLVGERWKSS GILVESEGPFIEEAVLLLKDGIELVTDSDKVLSNLLSYPLHATLSSPEGKVMIQNKLSEVSSGLLAAYDSGELLNALEEGHSGWQKWVKNFGKTMKLKGK SLFMPLRVLLTGKLHGPDMGSSIILLHQAGTGDMVSSQAEFVTLKERFGVLREIDWEALNKDQPPLEPAAIAAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Potri.009G169700 [exp]	0	1
AT1G63610			unknown protein		Potri.005G250000 [exp]	16.76	0.8367
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	21.97	0.7890	Pt-SAL2.1
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	187.18	0.7639	FDH1

Compare expression of checked genes

Potri.009G169700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.