Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38200 2336 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 2145 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 1580 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 1566 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 799 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT5G39500 261 / 3e-70 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT1G13980 261 / 4e-70 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G19610 202 / 6e-52 GNL2 GNOM-like 2 (.1) AT5G27970 60 / 2e-08 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208400 [exp] 2966 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 1667 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 1641 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 509 / 5e-151 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.017G078900 [exp] 263 / 6e-71 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 233 / 1e-61 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 226 / 2e-59 AT5G19610 1796 / 0.0 GNOM-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022983 [exp] 2474 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 2425 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009300 [exp] 1684 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 1210 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 1056 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 791 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 727 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10026627 [exp] 265 / 2e-71 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 259 / 1e-69 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 258 / 2e-69 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [poplar] [flax] Sec7 Sec7 domain PF09324 [poplar] [flax] DUF1981 Domain of unknown function (DUF1981) PF16206 [poplar] [flax] Mon2_C C-terminal region of Mon2 protein
Representative CDS sequence Show only first row Show all	>Potri.009G169800.1 pacid=42771245 polypeptide=Potri.009G169800.1.p locus=Potri.009G169800 ID=Potri.009G169800.1.v4.1 annot-version=v4.1 ATGTCAGCTTCACAAAACCTAGGCGGTCCTTCTAGCTGCGGTCGTGCCTTGGGCCCTTGTCTCGACAAGATCGTTAAAAACGCCGCCTGGAGGAAGCACT CCCACCTCGTTTCCTCCTGCAAATCTGTCCTCGACAAGCTCGAATCACTCCCCGCCGATTCTATTTCTATTTCTATTTCTAGTTCACACTCTCCTCTCTT CTCCCTCTCCCCTTCCGATGCCAATCTCGTTCTCAATCCCATTCTTCTAGCCTTAGACTCTGCTTACCCCAAGGTCGTCGATCCCGCACTCGAATGCCTT TTCAAATTGTTTTCCTCTGGCCTTATCCGAGGTGAGATCAATCATACCCCCTCGAGTCTCATCATTTTGAAGATAATTGAGAGTGTTTGTAAGGTTTGTG GTATTGGCGACGAAGCTGTTGAGCTTTCTGTGCTCAGAGTTTTGCTAGCTGCTGTTCGATCTCCTTGTGTTTTGATTCGCGGTGAATGTTTAGTGCATAT TGTTAGAACTTGTTATAATGTTTATCTTGGTGGGTTGAATGGGACCAATCAGATCTGTGCCAAATCGGTACTTGCACAGATTTTGCTTGTTGTTTTTACT AGAGTGGAGGAGGATTCTATGGATGTTAATGTTAAAACGGTTTCTGTTGGTGAATTGTTACAGTTTACTGATAAGAATTTGAATGAAGGGAGTTCTATTC ATTTCTGTCAGAATTTTGTTAATGAGGTCATGGCAGCGAGTGAAGGGGTTCCTGATGATAAGTTGTTGCTGCACAATCAACCGTCTGATGAACTCCGAAA TGGTAGTGCCGGTGCTGGCGATGATGATGATAAAATAGCTGAAGGGGATCATAAAAGTGAATTAAGCATTAAGGAAGCAAACGGTGAAGCTGATACGGAT ATTGGTGTGGGTGTTAGTGGCGGTGGTGAAGTTGGGGGGAGTAAGATTAGGGAAGATGGGTTTCTTCTCTTTAGGAATATTTGCAAATTGTCAATGAAGT TCTCATCTCAGGAGACCCCAGATGATCAAATTCTTTTGAGAGGGAAGATTTTATCTCTTGAGTTGCTTAAGGTGATCATGGACAATGGAGGTCCAATTTG GCGAAGTAATGAAAGGTTTCTCAACACTATTAAGCAATTCCTATGCTTGTCACTAATAAAGAACACTGCATTGTCAGTTATGGCTATTTTCCAGCTTCAG TGCTCCATTTTTATGATGTTGTTAGTTAAATTCAGATCTGGATTGAAGGAAGAAATTGGGATATTCTTTCCCATGCTTGTCCTTCGAGTACTTGAGAATG TTAACCAGCCTAGCTTCTTACAGAAAATGACTGTCCTGAATTTTGTGGACAAAATCAGCCAGGATTCCCAGATCATTGTTGATATTTTCATAAACTATGA CTGCGATGTGGATGCTCCAAACCTATACGAAAGGATTGTCAATGGTCTTCTGAAAACTGCTCTAGGACCACCTCCTGGTTCAACAACAACTTTGTCCTCG GTTCAGGATATTACTTTTAGGCATGAATCTGTGAAATGCTTGGTTAGCATCATCAGGTCAATGGGTGCTTGGATGGATCAAAAGTTGAGAACTGGAGATT CTTATCTGCCTAAGAGCTCTGAAAGTTCTACTTCAACCGAGAATCATTCAACTCTGAATGGAGAAGATGCAGGTGCCTCTGATTATGATTTGCATTCAGA AGTGAACTCTGAAATGTCTGATGCTGCTACCCTTGAACAACGACGGGCATATAAAATTGAACTCCAGAAAGGTATCTCCATATTCAATAGGAAACCTTCC AAGGGCATCGAGTTTCTGATAAATGCCAAAAAAGTTGGCGGTTCTCCTGAAGAAGTTGCCACCTTCCTGAAAAACACTACTGGCTTGAATGAAACTGTGA TTGGTGACTATTTGGGCGAGAGGGATGAGTTTTGTTTGAGAGTTATGCATGCTTATGTAGACTCATTCAACTTTAAAGAAATGGATTTTGGTGAAGCAAT AAGGTTTTTCTTACGGGGCTTCAGGTTACCTGGAGAGGCACAGAAGATTGATCGTATCATGGAAAAGTTTGCTGAGCGCTATTGTAAATGCAATCCAAAT TCATTTACCAGTGCAGATACTGCTTATGTTCTTGCGTACTCTGTGATAATGCTCAACACTGATGCACATAACAGCATGGTGAAGGATAAGATGAGCAAGG CTGATTTTATTCGGAACAACAGAGGAATTGATGATGGCAAGGATTTGCCTGAAGAGTATCTGGGCACTCTCTATGATCAAATTGTGAAAAATGAAATTAA GATGAGTGCTGATTCTTCAGTTCCTCAAAGCAAGCAGGCAAACAGCTTAAATAAGCTATTAGGTTTGGATGGTATACTCAATCTAGTTACTGGGAAGCAG ACTGAGGAAAAGGCATTGGGTGCAAATGGGCTTCTTATCAGGCGTATCCAAGAGCAGTTTAAAGCAAAGTCAGGAAAATCAGGGTCTATTTATCATGTTG TAACAGATGCAGCAATTCTGAGGTTTATGGTTGAGGTCTGCTGGGGTCCCATGCTTGCTGCATTTAGCGTGACTCTTGATCAGAGTGATGATAGGCTTGC TACTTCTCAGTGCTTACAGGGGTTTCAATGTGCTGTGCATGTTACTGCAGTCATGGGTATGCAGACCCAGAGAGATGCTTTTGTTACATCTGTGGCGAAG TTTACCTACCTCCACTGTGCTGCAGATATGAAGCTAAAAAATGTAGATGCTGTGAAGGCAATAATATCAATTGCCATTGAAGATGGCAACAATCTTCAGG ATGCTTGGGAGCATATCTTAACTTGCCTCTCCCGTGTTGAGCATCTGCAACTGCTTGGAGAAGGTGCACCACCTGATGCCTCTTATTTGACTCCATCTAA TGGTGAAACAGATGAAAAAGCACTGAAGTCAATGGGTTATCCTTCTCTAAAGAAAAAGGGAACTCTCCAGAATCCAGCCGTAATGGCTGTTGTTAGAGGG GGTTCATATGATAGCACCACTGTTGGAGCCAATTCTCCAGGACTTGTAACTCCAGGGCAAATTATTAACCTCATTTCAAATTTGAATTTGCTCGACCAGA TTGGGAATTTTGAATTGAACCATGTGTTTGCTAATAGCCAAAGGTTGAACAGTGAAGCAATAGTAGCTTTTGTGAAAGCTCTTTGCAAAGTTTCAATATC TGAGTTGCAGTCTCCAACAGATCCTCGTGTGTTTAGCCTCACAAAAATCGTAGAAATTGCGCATTATAATATGAACCGCATCAGATTAGTTTGGTCCCGC ATATGGAATGTTCTTTCTGATTTTTTTGTATCAGTTGGCTTGTCAGAAAATCTCTCTGTTGCAATTTTTGTGATGGATTCTCTTAGACAACTTGCTATGA AATTTTTAGAGCGTGAGGAGTTGGCAAATTACAACTTCCAGAATGAATTTTTGAGGCCATTTGTGATTGTTATGCAGAAAAGCAGCTCTACAGAGATCAG GGAATTAATAGTTAGGTGTATTTCGCAGATGGTCCTTAGTCGTGTCAGTAATGTGAAATCTGGGTGGAAAAGTGTTTTTATGGTTTTTACTGTTGCTGCA TCTGACGAGCGTAAGAATGTTGTCCTGTTGGCTTTTGAGACAATGGAAAAAATAGTCCGGGAATATTTTCCTTATATAACTGAGACAGAGAGGACAACTT TCACTGACTGTGTTAGATGCCTCACCACCTTCACAAATAGCAGGTTTAATAGTGATGTGAGCCTCAATGCAATTGCATTTCTCCGATTCTGTGCTCTGAA ACTTGCAGATGGAGGACTTATTTGCAATGTAAAGAGCAGGGTTGATGATCTATCCATCCCAATAGTAGATGAGGTTGCTTTAGATGTAGAAAATCATAGC AACAAAGATGATCACGCGTCCTTTTGGATTCCTTTGCTAACAGGGTTATCAAAATTAGCATCTGATCCCAGATCAGCTGTTCGAAAGAGTGCTCTAGAAG TCTTATTTAACATTCTCAATGACCACGGCCATCTTTTTTCACGCTCATTTTGGATCACTGTTTTCAATTCTGTTATTTTCCCCATATTCAGTGGTGTCAG TGACAAGAAAGATGTTAAAGATCAGGATTCGTCAACTTCAGCATCGCCTCATACAGAAAGAAGTACATGGGATTCTGAAACTTCTGCTGTTGCTGTCCAG TGTCTGGTAGACCTATTTGTCAGCTTTTTCAATGTGATTAGGTCTCAACTACAAAGCATAGTATCTATATTGATGGGATTTGTTAGGAGTCCTGTTAAGG GTCCTGCTAGCACTGGGGTTGCTTCACTGTTGCGTTTAGCAGGTGAACTGGGCAGCAGGATTTCAGAAGATGAATGGAGAGAGATTTTTCTAGCGCTGAA AGAGGCTGCTGCATCATTGTTACCAGGTTTCATGAAGGTCTTAAGAATCATGGATGACATTGAGATGCCCGAAAGCCCTAACCTTTATGCGGATGTGGAT GCGCCTTCTGATCATGGCTTCACAAATGATGATCTTCCGGATGACAATCTGCAAACTGCAGCATATGTGATCTCAAGAGTGAAGAGTCATATTGCTGTGC AGCTACTTATTGTGCAGGTTGTAAGTGATTTATACAAAGCGAACCGGCAATTCTTGTCAGCAGCCAATGTCAGAATCCTTGTTGATATATTTACCTCAAT AGCATCACATGCCCACCAACTGAATTCCGAGACAAACCTGCTGAAGAAACTGCAGAAAGGATGCTCTATAGCGGGGATCTCTGATCCTCCAATGGTGCAT TTTGAGAATGAGTCCTACGAGAATTACCTTGACTTCCTCCAAGATTTGCTCAAGGATAATCCATCCATGTCCGAGGCGTTGAGCATAGAAGAGCAACTCG CAGCGGTGTGTGAAGAGATATTGCAGATTTATCTGAACTGTACTGCTGGGTCGGAGGCTGTGCAGCAAAACAAGACGGTGATGCACTGGAATCTTCCTTT AGGTTCGGCCAAGAAGGAAGAGGTGGCAGCAAGGACGAGTTTGCTTTTGTCAGCTTTGCGGGTACTGAATGATTTAGAAAGGGATTCCTTTAGGGGCCAT GCCCGACAATTCTTTCCTTTGTTGGTAGATCTTGTACGGTGTGAGCATAACTCAGGAGAAGTTCAGCGTATTCTAAGCAATATTTTCCTATCATGTATAG GCACCATTATAATGTGA
AA sequence Show only first row Show all	>Potri.009G169800.1 pacid=42771245 polypeptide=Potri.009G169800.1.p locus=Potri.009G169800 ID=Potri.009G169800.1.v4.1 annot-version=v4.1 MSASQNLGGPSSCGRALGPCLDKIVKNAAWRKHSHLVSSCKSVLDKLESLPADSISISISSSHSPLFSLSPSDANLVLNPILLALDSAYPKVVDPALECL FKLFSSGLIRGEINHTPSSLIILKIIESVCKVCGIGDEAVELSVLRVLLAAVRSPCVLIRGECLVHIVRTCYNVYLGGLNGTNQICAKSVLAQILLVVFT RVEEDSMDVNVKTVSVGELLQFTDKNLNEGSSIHFCQNFVNEVMAASEGVPDDKLLLHNQPSDELRNGSAGAGDDDDKIAEGDHKSELSIKEANGEADTD IGVGVSGGGEVGGSKIREDGFLLFRNICKLSMKFSSQETPDDQILLRGKILSLELLKVIMDNGGPIWRSNERFLNTIKQFLCLSLIKNTALSVMAIFQLQ CSIFMMLLVKFRSGLKEEIGIFFPMLVLRVLENVNQPSFLQKMTVLNFVDKISQDSQIIVDIFINYDCDVDAPNLYERIVNGLLKTALGPPPGSTTTLSS VQDITFRHESVKCLVSIIRSMGAWMDQKLRTGDSYLPKSSESSTSTENHSTLNGEDAGASDYDLHSEVNSEMSDAATLEQRRAYKIELQKGISIFNRKPS KGIEFLINAKKVGGSPEEVATFLKNTTGLNETVIGDYLGERDEFCLRVMHAYVDSFNFKEMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPN SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMSKADFIRNNRGIDDGKDLPEEYLGTLYDQIVKNEIKMSADSSVPQSKQANSLNKLLGLDGILNLVTGKQ TEEKALGANGLLIRRIQEQFKAKSGKSGSIYHVVTDAAILRFMVEVCWGPMLAAFSVTLDQSDDRLATSQCLQGFQCAVHVTAVMGMQTQRDAFVTSVAK FTYLHCAADMKLKNVDAVKAIISIAIEDGNNLQDAWEHILTCLSRVEHLQLLGEGAPPDASYLTPSNGETDEKALKSMGYPSLKKKGTLQNPAVMAVVRG GSYDSTTVGANSPGLVTPGQIINLISNLNLLDQIGNFELNHVFANSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKIVEIAHYNMNRIRLVWSR IWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVSNVKSGWKSVFMVFTVAA SDERKNVVLLAFETMEKIVREYFPYITETERTTFTDCVRCLTTFTNSRFNSDVSLNAIAFLRFCALKLADGGLICNVKSRVDDLSIPIVDEVALDVENHS NKDDHASFWIPLLTGLSKLASDPRSAVRKSALEVLFNILNDHGHLFSRSFWITVFNSVIFPIFSGVSDKKDVKDQDSSTSASPHTERSTWDSETSAVAVQ CLVDLFVSFFNVIRSQLQSIVSILMGFVRSPVKGPASTGVASLLRLAGELGSRISEDEWREIFLALKEAAASLLPGFMKVLRIMDDIEMPESPNLYADVD APSDHGFTNDDLPDDNLQTAAYVISRVKSHIAVQLLIVQVVSDLYKANRQFLSAANVRILVDIFTSIASHAHQLNSETNLLKKLQKGCSIAGISDPPMVH FENESYENYLDFLQDLLKDNPSMSEALSIEEQLAAVCEEILQIYLNCTAGSEAVQQNKTVMHWNLPLGSAKKEEVAARTSLLLSALRVLNDLERDSFRGH ARQFFPLLVDLVRCEHNSGEVQRILSNIFLSCIGTIIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38200			SEC7-like guanine nucleotide e...		Potri.009G169800 [exp]	0	1
AT4G30100			P-loop containing nucleoside t...		Potri.002G093500 [exp]	2.23	0.8633
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	7.07	0.7786
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	8.94	0.7632
					Potri.002G261500 [exp]	15.87	0.8057
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	16.88	0.7869
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	18.52	0.7529
AT5G54830			DOMON domain-containing protei...		Potri.018G021000 [exp]	19.84	0.6885
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	22.04	0.7024
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G036100 [exp]	22.24	0.7731
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	22.71	0.7147

Compare expression of checked genes

Potri.009G169800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.