Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCSLD4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38190 1873 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT3G03050 1617 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1604 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT2G33100 1371 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 1323 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 1179 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G17420 800 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 797 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G18780 784 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G09870 783 / 0 CESA5 cellulose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208800 [exp] 2048 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.019G049700 [exp] 1654 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1629 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1468 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1463 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G177800 [exp] 1390 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1368 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.014G125100 [exp] 1351 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1343 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013851 [exp] 1853 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1823 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1791 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10009248 [exp] 1555 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1477 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1343 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10030453 [exp] 1338 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10002134 [exp] 1319 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1297 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10011736 [exp] 1237 / 0 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.009G170000.1 pacid=42771623 polypeptide=Potri.009G170000.1.p locus=Potri.009G170000 ID=Potri.009G170000.1.v4.1 annot-version=v4.1 ATGGCATCTCTATCTTCCCAACCATCTAAGAAGGCCATACGGAGCCCAGTAAGCACTAACAACAGCAGCTCCCAGCAGGGAAATCGTGGTTCCAACAGCC AAACTGTCAAGTTCGCTAGACGAACTTCAAGCGGTCGCTATGTTAGTCTATCAAGAGATGACATTGATATTTCTGGAGAATTATCCGGTTTGGATTACAT GAACTATACGGTGCAGATTCCTCTCACACCCGACAATCAGCCAATGGACACGTCCGTGGCAGTCAAGACCGAAGAGCAATACGTTTCCAATTCTCTTTTT ACAGGCGGGTTCAATAACGTTACGCGTGCCCATCTCATGGACAAGGTGATAGAATCGGAGGTGTCTCATCCTCAGATGGCTGGATCCAAGGGCTCTTCGT GTGCAATGCCTGCTTGTGATGGCATGATCATGAAGGATGAGAGAGGAAATGATATCATACCTTGTGAATGCAGGCTCAAAATTTGCAGGGATTGCTACAT GGACGCCCAAAAAGAAACCGGTTTGTGTCCAGGTTGCAAGGAACAGTACAAGGTGGGTGATTACGATGATGAAATACCAAATTTTTCCAGTGGAGCGCTG CCATTGCCACCTCCAGGTAAAGGTGGTGATCACAATAACATGACAGTGATGAAGAGAAACCAAAATGGAGATTTCGATCACAACAGGTGGTTGTTTGAGA CACAAGGTACTTACGGCTATGGGAATGCCTTTTGGCCCCAAGACGACATGTATGGTGATGATGGCGAGGAAGAGTTTCCAGGCGGCGTCCTAGAAAATAT GGATAAGCCTTGGAAGCCCCTCAGTCGCGAACAGCCAATCTCCCAAGCCGTTATCAGCCCTTACAGGTTGCTGATTTTAATTCGAATGGTGGTGCTGGCT TTCTTCTTGCATTGGCGAATAGTGAATCCAAATGATGATGCAAGATGGTTGTGGGGTATGTCAGTGGTTTGTGAAGTGTGGTTTGCTTTCTCGTGGATCC TGGATATAATTCCCAAACTTCATCCTATGAACCGGTCCACTGATCTTGAGGTCCTCCGTGACAAGTTTGACATGCCATCGCCTTCCAATCCCAGTGGCCG ATCTGATCTCCCTGGTGTTGACCTCTTTGTGTCCACTGCTGATCCTGATAAAGAGCCACCACTTGTCACAGCCAACACTATCCTTTCCATTCTCTCTGTG GATTATCCTGTAGAGAAGGTGGCATGCTATATCTCAGATGATGGAGGTGCGCTCCTCACTTTTGAGGCAATGGCCGAGGCAGCAAGCTTTGCTGATTTGT GGGTTCCATTCTGTCGAAAACATAATATTGAGCCAAGGAATCCTGAAACCTACTTCAACCTAAAAGTTGATCCAACTAAGAACAAGAGCAGGCCTGATTT TGTCAAAGATAGAAGGAAGATGAAAAGGGAGTACGATGAATTCAAGGTGAGGATCAATGGGCTTCCAGATTCTATAAGGAGGAGATCGGATGCTTTCAAT GCAAGGGAGGAAATGAAGATGTTGAAGCACATAAGGGAGAGTGGAGGTGATCCTTTGGAGCCAATAAAGGTCCCGAAAGCTACATGGATGGCTGATGGCA CCCATTGGCCTGGAACTTGGGCGTCCCCAGCTGCCGAACATTCCAAAGGTGACCATGCTGGAATTCTTCAGGTGATGTTGAAGCCTCCTAGCCCTGACCC ACTGATGGGAGGAACGGATGATAAGATGATAGACTTCACAGATGTGGATATACGTCTACCTATGTTTGTGTACGTCTCACGAGAAAAGAGGCCAGGTTAT GACCATAACAAAAAAGCTGGTGCCATGAATGCTCTTGTAAGAGCATCTGCCGTTCTATCCAATGGTCCATTCATTCTCAACTTAGATTGCGATCACTACA TCTACAACTGCAAAGCAATCAGGGAAGGAATGTGCTTCATGATGGACAGAGGAGGTGAAAATATCTGCTATATACAGTTCCCTCAGAGATTTGAAGGCAT TGATCCTAATGATAGATATGCTAATCGCAATACTGTGTTTTTTGATGGAAACATGCGTGCCCTTGATGGTGTTCAGGGCCCGGTTTATGTTGGAACGGGT TGCATGTTTAGAAGATTTGCTTTATACGGATTTGATCCACCCAATACAAACAAGACGGAGCAAAAGAAAGATTCAGAGACGCTTCCCTTAGCAACTTCCG AATTTGATCCTGATCTTGATTTCAATCTGCTACCCAAGCGGTTTGGGAATTCTACATTGCTGGCTGAATCTATTCCTATTGCCGAGTTCCAAGGCCGGCC GCTAGCTGATCATCCTGCTGTCAAGTATGGCCGTCCTCCTGGTGCTTTGAGGGTCCCTCGTGAACCACTTGATGCCACTACAGTTGCTGAAGCTGTGTCT GTCATTTCTTGCTGGTATGAGGACAAGACTGAATGGGGGGACAGAGTGGGTTGGATTTATGGTTCAGTCACGGAAGATGTTGTGACAGGCTATAGAATGC ACAACCGTGGCTGGCGCTCTGTCTATTGCATAACCAAGCGCGATGCATTTCGTGGCTCAGCTCCAATTAACCTTACTGACCGTCTTCACCAGGTGCTTCG TTGGGCAACTGGCTCTGTTGAGATTTTCTTCTCCAGAAACAATGCCTTTTTGGCCAGTAGGCGTCTCAAACTCCTCCAGCGCTTTGCTTATCTTAATGTT GGCATCTACCCATTCACCTCGATTTTCTTGATCGTCTATTGCTTTCTCCCTGCACTCTCACTTTTTTCCGGATACTTCATTGTCCAAACTCTGGACGTTG CATTTTTAATCTACTTGCTACTCATAACTATTTGCCTCGTCGTTCTGGCTATTCTAGAGGTGAAATGGTCTGGTATAGAGTTGGAAGAGTGGTGGAGGAA CGAACAGTTCTGGCTTATCTCTGGAACCAGTGCCCACTTTGCTGCTGTCATGCAAGGCCTTCTCAAGGTGATTGCAGGAATTGAGATATCTTTCACATTG ACTTCCAAGTCTGCAGGAGATGAAGTTGACGATATCTATGCAGACTTGTATCTTGTAAAGTGGACATCTTTGATGATTATGCCCATTGTTATTGCCATGA CAAACATAATTGCCATGGCCTTTGCTTTTATAAGGACGATTTATAGCACAGTTCCGCAGTGGAGTAAGTTTGTTGGTGGAGCTTTCTTTAGTTTCTGGGT GTTGGCTCATTTGTATCCTTTTGCCAAGGGCTTGATGGGGAGGAGAGGGAAGACCCCAACCATTGTGTTCGTTTGGTCTGGTCTCATTGCCATAATAATC TCTTTGCTATGGATTGCCATTAGCCCACAAAAGCCAAATGCAACAGCTGACGGAGTTGGGGGAGGGTTTCAGTTCCCTTGA
AA sequence Show only first row Show all	>Potri.009G170000.1 pacid=42771623 polypeptide=Potri.009G170000.1.p locus=Potri.009G170000 ID=Potri.009G170000.1.v4.1 annot-version=v4.1 MASLSSQPSKKAIRSPVSTNNSSSQQGNRGSNSQTVKFARRTSSGRYVSLSRDDIDISGELSGLDYMNYTVQIPLTPDNQPMDTSVAVKTEEQYVSNSLF TGGFNNVTRAHLMDKVIESEVSHPQMAGSKGSSCAMPACDGMIMKDERGNDIIPCECRLKICRDCYMDAQKETGLCPGCKEQYKVGDYDDEIPNFSSGAL PLPPPGKGGDHNNMTVMKRNQNGDFDHNRWLFETQGTYGYGNAFWPQDDMYGDDGEEEFPGGVLENMDKPWKPLSREQPISQAVISPYRLLILIRMVVLA FFLHWRIVNPNDDARWLWGMSVVCEVWFAFSWILDIIPKLHPMNRSTDLEVLRDKFDMPSPSNPSGRSDLPGVDLFVSTADPDKEPPLVTANTILSILSV DYPVEKVACYISDDGGALLTFEAMAEAASFADLWVPFCRKHNIEPRNPETYFNLKVDPTKNKSRPDFVKDRRKMKREYDEFKVRINGLPDSIRRRSDAFN AREEMKMLKHIRESGGDPLEPIKVPKATWMADGTHWPGTWASPAAEHSKGDHAGILQVMLKPPSPDPLMGGTDDKMIDFTDVDIRLPMFVYVSREKRPGY DHNKKAGAMNALVRASAVLSNGPFILNLDCDHYIYNCKAIREGMCFMMDRGGENICYIQFPQRFEGIDPNDRYANRNTVFFDGNMRALDGVQGPVYVGTG CMFRRFALYGFDPPNTNKTEQKKDSETLPLATSEFDPDLDFNLLPKRFGNSTLLAESIPIAEFQGRPLADHPAVKYGRPPGALRVPREPLDATTVAEAVS VISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASRRLKLLQRFAYLNV GIYPFTSIFLIVYCFLPALSLFSGYFIVQTLDVAFLIYLLLITICLVVLAILEVKWSGIELEEWWRNEQFWLISGTSAHFAAVMQGLLKVIAGIEISFTL TSKSAGDEVDDIYADLYLVKWTSLMIMPIVIAMTNIIAMAFAFIRTIYSTVPQWSKFVGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLIAIII SLLWIAISPQKPNATADGVGGGFQFP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	0	1	ATCSLD4.1
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	3.16	0.9375
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	4.58	0.9348
AT2G20430		RIC6	ROP-interactive CRIB motif-con...		Potri.002G035500 [exp]	5.29	0.9295
AT5G05820			Nucleotide-sugar transporter f...		Potri.009G040800 [exp]	8.06	0.9285
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	8.36	0.9239
AT1G78520			Carbohydrate-binding X8 domain...		Potri.001G380600 [exp]	9.48	0.8354
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	11.66	0.9205
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	13.03	0.9145
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184600 [exp]	13.26	0.9009
AT1G64295			F-box associated ubiquitinatio...		Potri.007G037500 [exp]	14.49	0.8142

Compare expression of checked genes

Potri.009G170000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.