Plant FIBer expression Database

Potri.009G170400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G209500
[exp]
87 / 8e-21 AT4G38150 314 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G170400.1 pacid=42772312 polypeptide=Potri.009G170400.1.p locus=Potri.009G170400 ID=Potri.009G170400.1.v4.1 annot-version=v4.1
ATGGCATCATCATCTCAATTTCGGATCTTGAAGCTCCATTCTCTCTCGCTTACCTCGCTTTTTCAAATACTGCGCCGTTTCAGCAGCTCTGTTAAAGGAC
GAGCTACTACTTCTACTGGTGTTGCTGCTGCTGCTGGTTTCAATTTCAATGATGAAGAAGAAAGGAAGACGCAGATCCAGAATCAGAATCAGAAACCACC
GGATCCCATACCAAACAGGCCTTTAAGAGGCGAGAGACCTAACTTCAATAATAACTATAGCAATAGAGGAGGTGGTGGTGGAAGAGGAGGAGGAGGAGAA
CCTAACTATAACGCTAACAATCCCCGCCGTCCCCAACCATCTCATCCGCCTCCAACAACCTCACAGCCCCAAACAGATGATTTTAATAACATCTCTGATG
ATGCTTCTTACTGGATATTTGCTACTCATGTGTTGATGAATGTATTTGATCAGCAGTTGTCATGTTAA
AA sequence
>Potri.009G170400.1 pacid=42772312 polypeptide=Potri.009G170400.1.p locus=Potri.009G170400 ID=Potri.009G170400.1.v4.1 annot-version=v4.1
MASSSQFRILKLHSLSLTSLFQILRRFSSSVKGRATTSTGVAAAAGFNFNDEEERKTQIQNQNQKPPDPIPNRPLRGERPNFNNNYSNRGGGGGRGGGGE
PNYNANNPRRPQPSHPPPTTSQPQTDDFNNISDDASYWIFATHVLMNVFDQQLSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G170400
[exp]
0 1
Potri.012G100001
[exp]
2.00 0.9038
AT1G51940 protein kinase family protein ... Potri.008G187500
[exp]
2.44 0.8926
AT1G27050 HD ATHB54 homeobox protein 54 (.1) Potri.010G034500
[exp]
4.24 0.8677
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.013G104100
[exp]
5.65 0.8768
AT1G47750 PEX11A peroxin 11A (.1) Potri.002G134000
[exp]
6.16 0.8368
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.013G046150
[exp]
6.32 0.8707
AT3G25430 Polynucleotidyl transferase, r... Potri.014G018500
[exp]
6.70 0.8489
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050120
[exp]
7.00 0.8667
AT4G29820 CFIM-25, ATCFIM... ARABIDOPSIS THALIANA HOMOLOG O... Potri.006G146400
[exp]
7.07 0.8573
Potri.006G120901
[exp]
9.94 0.8546

Potri.009G170400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.