Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58140 397 / 2e-133 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 290 / 5e-92 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G44830 236 / 7e-73 Protein kinase superfamily protein (.1) AT2G34650 227 / 3e-72 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G47750 229 / 1e-71 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT2G36350 231 / 2e-70 Protein kinase superfamily protein (.1) AT5G55910 223 / 3e-70 D6PK D6 protein kinase (.1) AT4G26610 222 / 1e-69 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT3G27580 223 / 2e-69 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT3G12690 223 / 2e-69 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209700 [exp] 451 / 3e-153 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 329 / 1e-106 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G146700 [exp] 234 / 6e-72 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 234 / 6e-72 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 227 / 1e-70 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.017G075400 [exp] 224 / 2e-70 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 225 / 4e-70 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G003800 [exp] 225 / 4e-70 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 227 / 6e-70 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026572 [exp] 413 / 2e-139 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 405 / 1e-136 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 392 / 2e-131 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10018122 [exp] 265 / 3e-83 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10006273 [exp] 235 / 8e-73 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10020571 [exp] 233 / 6e-72 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10006272 [exp] 226 / 8e-72 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10042911 [exp] 227 / 1e-71 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10020572 [exp] 224 / 5e-71 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10036150 [exp] 221 / 2e-70 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G170550.1 pacid=42772094 polypeptide=Potri.009G170550.1.p locus=Potri.009G170550 ID=Potri.009G170550.1.v4.1 annot-version=v4.1 ATGAATTTATTCAAGGAGGAATCTGCAAGGTTCTATGCTGCGGAGGTTGTGATTGGCTTGGAATATCTTCATTGTTTAGGAATGGTTTACCGTGACTTGA AGCCTGAAAATATTCTACTTCAGAAGGATGGACATATTGTTTTGAGTGACTTTGATTTGTCATTTTTGACATCCTGTAAACCACAAATTATAAAGCATGC ACCACCTAATAAGAGAAGAAGATCAAGGAGCCAACCACCACCAACATTTGTTGCGGAACCAGTAACACAATCAAATTCTTTTGTTGGGACTGAAGAATAT ATTGCTCCTGAAATAATCACAGGCATGGGCCACGGCAGTGCAATTGACTGGTGGGCTCTTGGTGTTTTGTTGTATGAAATGCTATATGGTCGTACACCTT TCAGGGGAAAGAACAGGCAAAAGACATTTGCCAACATTTTGCACAAAGATCTCACCTTCCCAAGCAGCATCCCTGTTAGTCTTCCTGCCAGACAATTGAT TAATGCATTGCTGAACAGAAACCCTGCCATCCGATTAGGATCAAAAACTGGTGCTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATTAATTGGCCT CTCATACGCTGCATGAACCCACCACTGTTGGATGCGCCTCTGCAATTAATCAGTAAAGATCCAAAGGCCAAGGATGTTGTGCCTGTACACTCTATGGGCC TAGAGATTTTTTAA
AA sequence Show only first row Show all	>Potri.009G170550.1 pacid=42772094 polypeptide=Potri.009G170550.1.p locus=Potri.009G170550 ID=Potri.009G170550.1.v4.1 annot-version=v4.1 MNLFKEESARFYAAEVVIGLEYLHCLGMVYRDLKPENILLQKDGHIVLSDFDLSFLTSCKPQIIKHAPPNKRRRSRSQPPPTFVAEPVTQSNSFVGTEEY IAPEIITGMGHGSAIDWWALGVLLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLPARQLINALLNRNPAIRLGSKTGANEIKQHPFFRGINWP LIRCMNPPLLDAPLQLISKDPKAKDVVPVHSMGLEIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.009G170550 [exp]	0	1
					Potri.014G182232 [exp]	3.46	0.8746
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.007G006500 [exp]	10.77	0.7926
AT5G17620			unknown protein		Potri.013G072300 [exp]	11.40	0.8855
					Potri.014G133450 [exp]	12.12	0.7459
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	18.00	0.8622
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	18.65	0.8658
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G145516 [exp]	23.43	0.7915
AT5G05800			unknown protein		Potri.008G074066 [exp]	24.26	0.8347
AT3G20530			Protein kinase superfamily pro...		Potri.004G018400 [exp]	24.45	0.8038
AT4G03440			Ankyrin repeat family protein ...		Potri.011G133600 [exp]	28.49	0.8212

Compare expression of checked genes

Potri.009G170550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.