Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58140 824 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 696 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G02710 128 / 8e-32 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT5G40030 107 / 3e-24 Protein kinase superfamily protein (.1) AT4G26610 104 / 3e-23 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 103 / 3e-23 D6PK D6 protein kinase (.1) AT5G47750 103 / 8e-23 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT2G44830 101 / 5e-22 Protein kinase superfamily protein (.1) AT3G12690 100 / 6e-22 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G79250 100 / 7e-22 AGC1.7 AGC kinase 1.7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209700 [exp] 1168 / 0 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 694 / 0 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.008G180700 [exp] 180 / 6e-50 AT2G02710 427 / 5e-149 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.010G053500 [exp] 118 / 2e-28 AT2G02710 431 / 2e-150 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.014G047500 [exp] 104 / 7e-23 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 103 / 1e-22 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.002G137700 [exp] 103 / 1e-22 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 102 / 2e-22 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.016G004900 [exp] 102 / 3e-22 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026572 [exp] 897 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 843 / 0 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 843 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10018122 [exp] 710 / 0 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10036144 [exp] 708 / 0 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10013856 [exp] 405 / 2e-133 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10037216 [exp] 121 / 2e-29 AT2G02710 425 / 2e-148 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10036711 [exp] 103 / 2e-23 AT2G02710 389 / 1e-133 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10042911 [exp] 103 / 9e-23 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10028208 [exp] 103 / 1e-22 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.009G170640.4 pacid=42772929 polypeptide=Potri.009G170640.4.p locus=Potri.009G170640 ID=Potri.009G170640.4.v4.1 annot-version=v4.1 ATGGAAAAACCAAAGACAAACTCTTCTACGGTTGATCAACCGCGGAGATCAATAGAGGTTTACGATCCTCATAATATTAATAGTGTTACAAGTGATGGCA GTGGATCAATAGAGGTCCATGCAGTGGAAGAGGGATCGGGATCAATATCTCCAACTCCAACTATCAAATCTACTTCCGGTAGCAGCAGAGAACCTGTGAA CAAGTGGATGGCATTTGAAACAAAGTCCAAGATCACCTCTGATCATGATGACGATGCCATTTCAGATGAATTTAATGTGTGTGGGAGCAGTAATAGGGTT AAAGCTGGAAAAGATGATGATCACGGAACCTCATCTAATCATAATAATTCTTCTTCTAACCGACAACCCTCCTCCTCCTCCTCTTCGAATAAGATACTAA CCGAAGCTAGCATTGCAGCAAGGAGTGCAGAATGGGGATTGGTTGTGAGGTCAGATGTAGGAGAAGGTACTTTCAAATCTACAGCAATCAGATCAGAACA ACTGGAAGATGATGGAGGAGATACAAGCAAAAAAAACTCGTTTTTGGTGGATTCGACGAGAACATCAGAGGAAGACGGAGCAGGAGGAGTCTTTCCAAGG GTATCCCAAGAGCTGAAGGATGCTCTGGCAACATTGCAGCAAACGTTTGTGGTCTCTGATGCCACCAAACCAGACTGCCCTATCATGTATGCAAGCGGTG GTTTTTTTACCATGACCGGCTATTCGTCAAAGGAAATTATTGGAAGGAACTGCCGGTTTCTGCAGGGAGCAGATACGGACCGGAATGAAGTGGCGAAGAT ACGAGATGCCGTCAAGAATGGGACAAGTTACTGTGGGAGGCTTCTCAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTCACCGTCACCCCTATC AAGGATGATCGTGGCAACGCTATCAAATTCATCGGAATGCAGGTGGAGGTCAGCAAATATACGGAAGGTGTTAACGACAAGGCTTTTCGCCCAAATGGAT TGCCCAAGTCATTAATCCGCTATGATGCTCGTCAGAAGGCTAAGGCTTTGGATTCCATTACTGAAGTTGTCCAAACTCTCAAGCATCCCAAATCTCCCTC TCGCACTGCGAGTCATGACACTTCTGACCACCTCGATTGTCTTCTCCCTAAATCCGTCGATTTTGACAGCTTCACCCTCCCTAGTAGACTCACTCCAAGC AATGTCTCTCAATCCCCCACTGCCAAAAACTCCAGAAAATCACCTCGCATTCCCTTGATGGGGCTCAAATCTCAGTCTATAATTTCCGCGGTAAAGCATG AAGAACCACCAGCTATTGAGCCTGAGATTTTGATGACTAAAGACATTGAACTCTCTGACGGCTGGGACCGTGCTGAATGGGAAAGGGACATCCGCCAAGG ATTTCATTTAGCTACCACATTGGAACACATTGAAAATAATTTTGTGATCACAGATCCTAGACTTCCTGATAACCCTATTACATTTGCTTCTGATGGCTTT CTTGAACTAACAGAATACACTCGAGAAGAAATTTTGGGAAGGAACTGTCGATTTCTTCAAGGACCTGAAACAGATCAATCAACTGTCTCAAAGATAAGAG ATGCCATCAGAGAACAAAGAGAAATCACTGTTCAATTGATCAACTACACCAAGAGTGGAAAGAAATTCTGGAACTTATTTCACTTGCAGCCTATGCGTGA CCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTGGATGGAAGTGATCATGTGGAACCCCTGCGAAACCGCCTCTCAGAGGCAACAGAACAACAA AGTGCTAAGTTGGTTAAAGCTACTGCAGAAAATGTGGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGAGAACCGAAGATTTGTGGGCAATTCATT CCCAGACTGTCTTTCCACGACCTCACAAAAAGGATAGTCCTTCTTGGACTGCAATACAAAAGATCACTTCTCGTGGTGAAGAAATTGGGCTACATCATTT CAAGCCCATAAAACCCTTGGGCTGTGGTGATACTGGCAGTGTGCATTTAGTGGAACTTCAAGGTGCAGGGGAGCTGTATGCTATGAAGGCAATTGAAAAA TCTATGATGCTAAACCCTAACAAGGTTCATCGAGCATGTATTGAGAGGGAAATCATTTCGCACTTGGATCATCCTTTTCTTCCAACACTGTATACTTCTT TTCAGCACCTTCACTGCTAG
AA sequence Show only first row Show all	>Potri.009G170640.4 pacid=42772929 polypeptide=Potri.009G170640.4.p locus=Potri.009G170640 ID=Potri.009G170640.4.v4.1 annot-version=v4.1 MEKPKTNSSTVDQPRRSIEVYDPHNINSVTSDGSGSIEVHAVEEGSGSISPTPTIKSTSGSSREPVNKWMAFETKSKITSDHDDDAISDEFNVCGSSNRV KAGKDDDHGTSSNHNNSSSNRQPSSSSSSNKILTEASIAARSAEWGLVVRSDVGEGTFKSTAIRSEQLEDDGGDTSKKNSFLVDSTRTSEEDGAGGVFPR VSQELKDALATLQQTFVVSDATKPDCPIMYASGGFFTMTGYSSKEIIGRNCRFLQGADTDRNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPI KDDRGNAIKFIGMQVEVSKYTEGVNDKAFRPNGLPKSLIRYDARQKAKALDSITEVVQTLKHPKSPSRTASHDTSDHLDCLLPKSVDFDSFTLPSRLTPS NVSQSPTAKNSRKSPRIPLMGLKSQSIISAVKHEEPPAIEPEILMTKDIELSDGWDRAEWERDIRQGFHLATTLEHIENNFVITDPRLPDNPITFASDGF LELTEYTREEILGRNCRFLQGPETDQSTVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSEATEQQ SAKLVKATAENVDEAVRELPDANLRTEDLWAIHSQTVFPRPHKKDSPSWTAIQKITSRGEEIGLHHFKPIKPLGCGDTGSVHLVELQGAGELYAMKAIEK SMMLNPNKVHRACIEREIISHLDHPFLPTLYTSFQHLHC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.009G170640 [exp]	0	1
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.003G133700 [exp]	1.41	0.9679
AT3G10130			SOUL heme-binding family prote...		Potri.016G098500 [exp]	1.41	0.9703
AT1G59970			Matrixin family protein (.1)		Potri.013G100400 [exp]	4.89	0.9442
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	5.19	0.9599
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	5.29	0.9477
					Potri.010G010416 [exp]	9.79	0.9336
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	13.85	0.9420
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	14.14	0.9445
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	16.43	0.9410
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	16.58	0.9408

Compare expression of checked genes

Potri.009G170640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.