Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HDA902,RPD3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38130 811 / 0 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 594 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 504 / 5e-177 HDA09, HDA9 histone deacetylase 9 (.1) AT5G35600 449 / 6e-156 HDA7 histone deacetylase7 (.1) AT3G44490 129 / 3e-35 HDA17 histone deacetylase 17 (.1) AT1G08460 119 / 2e-29 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61060 115 / 4e-27 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT3G18520 108 / 5e-25 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT3G44660 100 / 1e-24 HDA10 histone deacetylase 10 (.1) AT5G61070 106 / 4e-24 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209800 [exp] 936 / 0 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 603 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 590 / 0 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 505 / 1e-177 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G092900 [exp] 113 / 2e-26 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 100 / 3e-22 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 94 / 9e-21 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 83 / 6e-17 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.006G230300 [exp] 74 / 7e-14 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001605 [exp] 848 / 0 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 836 / 0 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 601 / 0 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 519 / 0 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10020570 [exp] 518 / 0 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 506 / 1e-176 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10034689 [exp] 120 / 9e-29 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 103 / 2e-23 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10017845 [exp] 103 / 3e-23 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10001850 [exp] 100 / 9e-23 AT1G08460 558 / 0.0 histone deacetylase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [poplar] [flax] Arginase PF00850 [poplar] [flax] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Potri.009G170700.2 pacid=42772195 polypeptide=Potri.009G170700.2.p locus=Potri.009G170700 ID=Potri.009G170700.2.v4.1 annot-version=v4.1 ATGGACACTGGTGGCAATTCTCTTCCGTCTGCTGCTCCTGATGGGGTTAAGAGAAAGGTTTGCTATTTCTACGATCCAGAAGTCGGCAATTACTATTATG GCCAGGGTCACCCCATGAAGCCCCATCGCATTCGAATGACCCATGCTCTCCTTGCCCACTACGGCTTGCTTCAGCACATGCAGGTCCTCAAGCCCTTTCC TGCTCGTGACCGCGATCTTTGCCGCTTCCATGCTGATGATTATGTCTCTTTCCTCCGCAGCATCACCCCTGAGACCCAGCAGGACCAGCTCAGGCAGCTC AAGCGCTTTAACGTTGGCGAAGATTGTCCTGTCTTTGATGGCCTCTACTCCTTCTGCCAGACTTACGCTGGTGGCTCTGTTGGGGGTGCCGTCAAGTTAA ATCACAACCTCTGTGACATTGCTGTCAATTGGGCTGGTGGCCTCCATCATGCTAAGAAGTGTGAAGCTTCTGGTTTTTGCTATGTTAATGACATCGTGCT TGCAATCTTGGAGCTTCTTAAAGTGCATGAGCGTGTTCTGTATGTGGATATTGATATTCACCATGGTGATGGTGTGGAGGAAGCATTTTACACCACTGAT AGAGTCATGACTGTTTCATTCCATAAATTTGGAGATTACTTTCCCGGCACAGGAGATATACGTGACATTGGATTTTCAAAAGGAAAATACTACTCTCTCA ATGTTCCATTGGATGATGGAATTGACGATGAGAGCTATCATTTCTTGTTTAAACCACTAATTGGAAAAGTAATGGAAGTTTTTAAACCAGGTGCTGTGGT TCTCCAATGTGGTGCTGACTCGTTATCTGGGGATAGATTAGGATGCTTCAATCTTTCTATCAAGGGCCATGCAGAGTGCGTGAAATATATGAGATCTTTC AATGTGCCATTATTGCTATTGGGTGGTGGTGGCTACACCATTCGAAATGTTGCTCGCTGCTGGTGCTACGAGACTGGAGTTGCACTTGGAATTGAAGTTG ATGATAAGATGCCACAGCATGAGTATTATGAGTACTTTGGTCCAGATTATACTCTTCATGTTGCCCCTAGCAACATGGAAAATAAGAATTCCTTCCAGTT ACTTGAGGAAATACGGTCTAAGCTCCTTGATAATCTTTCAAAGCTTCAGCATGCACCGAGTGTCCAATTTCAGGAAAGACCACCTGATACTGAGCTTCTG GAGGCAGAAGAAGATCAGGATGATGCAGATGAGAGATGGGATCCAGATTCTGATATGGATGTTGATGATGAACGAAAGCCATTACCAAGCAGAGTGAAGA GAGAAATAGTTGAAGCTGAGCCAAAGGAGTTGGAGGGTCAGAAAGGAAGTTCTGAGTATGCTAGAGGCTTTGATGCAGCAATAGACGAAAATGCAAGTGG AAAGGCTTTGGATGCTGGTCCTATGCAAATTGATGAGCCAGGTGTCAGAGTTGAACAGGAAAATGTGAACAAGCATTCTGATCAGTTGTACTCCAAGTAG
AA sequence Show only first row Show all	>Potri.009G170700.2 pacid=42772195 polypeptide=Potri.009G170700.2.p locus=Potri.009G170700 ID=Potri.009G170700.2.v4.1 annot-version=v4.1 MDTGGNSLPSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQL KRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLYVDIDIHHGDGVEEAFYTTD RVMTVSFHKFGDYFPGTGDIRDIGFSKGKYYSLNVPLDDGIDDESYHFLFKPLIGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSF NVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSFQLLEEIRSKLLDNLSKLQHAPSVQFQERPPDTELL EAEEDQDDADERWDPDSDMDVDDERKPLPSRVKREIVEAEPKELEGQKGSSEYARGFDAAIDENASGKALDAGPMQIDEPGVRVEQENVNKHSDQLYSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	0	1	HDA902,RPD3.1
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	1.00	0.8492
AT2G19490			recA DNA recombination family ...		Potri.006G148700 [exp]	3.87	0.8217
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.002G097500 [exp]	6.00	0.7963	Pt-GRF10.2
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.005G201100 [exp]	10.39	0.7873
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	12.24	0.8286
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.018G068200 [exp]	12.52	0.7057	NFC906,ATMSI4.3
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.002G165300 [exp]	13.67	0.7917
					Potri.013G032000 [exp]	15.49	0.7850
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077500 [exp]	18.38	0.7861
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	20.29	0.8254

Compare expression of checked genes

Potri.009G170700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.