Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24255 193 / 1e-53 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) AT1G43730 114 / 4e-28 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT4G04650 114 / 1e-27 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT5G18880 105 / 4e-25 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT2G02520 98 / 3e-23 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT1G33710 93 / 1e-21 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT1G60720 93 / 7e-21 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT5G16486 73 / 1e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT4G05095 61 / 5e-11 unknown protein AT1G45063 60 / 2e-09 copper ion binding;electron carriers (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G000150 [exp] 296 / 3e-97 AT1G43730 107 / 4e-27 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) Potri.006G175124 [exp] 73 / 2e-14 AT3G24255 70 / 8e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) Potri.018G042350 [exp] 63 / 2e-10 AT4G29090 81 / 3e-16 Ribonuclease H-like superfamily protein (.1) Potri.016G103750 [exp] 52 / 9e-08 AT1G43730 55 / 1e-09 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) Potri.011G086901 [exp] 51 / 1e-07 AT4G04650 54 / 2e-09 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) Potri.002G067201 [exp] 50 / 3e-07 AT3G24255 68 / 5e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) Potri.005G154050 [exp] 47 / 4e-06 AT4G05095 44 / 3e-06 unknown protein Potri.007G061250 [exp] 41 / 0.0005 AT4G04650 44 / 7e-06 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) Potri.006G162650 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008147 [exp] 45 / 1e-05 AT4G04650 58 / 8e-11 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13966 [poplar] [flax] zf-RVT zinc-binding in reverse transcriptase
Representative CDS sequence Show only first row Show all	>Potri.010G000101.1 pacid=42796847 polypeptide=Potri.010G000101.1.p locus=Potri.010G000101 ID=Potri.010G000101.1.v4.1 annot-version=v4.1 ATGATATTCTGCCGTGCAGACTTCATCTCAGTTCAATGTGTTCGAAATGCTTTGGACTCATTCTCAAATATCTCTGGTTTAACCATCAACCATGCCAAAA GTCTTGTGTTTCTTTCGGGGGTCAAGCAGGATATTAAAGCTGCTATTACAAACTGTTTTGGATTCAAGCCAGGGACTCTCCCAGTGAAATATCTTGGCGT TCCATTGATTAGCTCCAGGTTAACTCATCAACACTACATGCCACTGTTAGAAAGGATCATCACCAGAATTAAACTTTGGACTGCAGCCTCCCTTTCCTAT GCTGGTCGGCTTCAACTTATCAAATCCACACTGTTCTCTATTCAAGTTTATTGGTCAAGTATGTTCATGCTTCCCTGTTCAATTATAAGGAAAATTGAGA GCACCTTAGCAGCTTTTCTCTGGAAGGGTACATCTCTAACATCTTTAGGAGCAAAAGTGGCGTGGGATTCGTTATGCTATCCTCTCAAGGAGGGGGGCTT AGGGATTAAGAAGATCAAAATTTGGAACAAGGCTGCCATCTTAAAACACATCTGGCGACTGCTTACAGAAAAAACATCGGTTTGGGTTTCTTGGGTGCAC TCAGTCCTGCTAAGAGGGCGCTGTTTCTGGTTCTATAATGCCCCATCAAATGCTTCTTGGTCTTGGCGGAAGATCCTCCTTAGCAGAAGTTGGTGCAGAG GTCTATTTTCTCCAAAGATAGGAAATGGTTTGGAAACTTTTCTTTGGCTAGATTACTGGTTGCCAAATGGGAAACGAATTTGTGACATTCTTCCATTCCG TCAGTTATCCAGAACTGGTTTAACATGTGATGCAAAGGTTTCCTCTATAATCTCAGAAGGCAGATGGTCATTTCCAGTTGGTCACCCGGAACTTCAACTA ATCTGGAACTCTATCCAGTTCTTCCCTCGGCCTCATCAACCAGACATTTGCAACTGGAAGGGACTTCACTCAGGAAAGTTTTCAATCGACTCTGCATGGG AATTACTAAGAGATAAAAGACCTATCAACTCCATCTTCCACCTCATCTGGTTTCCAGATCATATCCCTCGGCATGCTTTTATTCTCTGGATCGCATCAAT GGGGCGTTTGCATATAAAGGATAGGCTACGCTCTTTCCAGGTCATCTCGTCTGCCACATGTTCATTATGCGGATTGCATGATGAAACACATGATCACCTA TTTTTCGAATGTAGCTACTCCGCCATGGTGTGGAACACTCTCAGTGAAAAAAGTCTCATAAACTGGCCAAGTATGTCCTTCCATGGTTTACTTCTTTGGG CTGCAACAAGTTTGAGGGATAACAAGGTGTTCTCACATCTCCTAGCAAGGCAAATCTTATCCTCAACTCTCTACTTTGTATGGTATGAGAGAAATAACAG AATTTTCAACCAAGCTTCCAAGACTCCGCAGGTTCTTAGTGGGGAGATTATTGAAACCATCCGATCAGTCTTGATGGAGAAGGATCAAAGAAAAATCCCA AACAACCTCAAAAGCATCTGGGGACTTCAAGCAGCCGAAGACATGCAACCTGATATGATGCGGCCCCTCACAGCCACATGA
AA sequence Show only first row Show all	>Potri.010G000101.1 pacid=42796847 polypeptide=Potri.010G000101.1.p locus=Potri.010G000101 ID=Potri.010G000101.1.v4.1 annot-version=v4.1 MIFCRADFISVQCVRNALDSFSNISGLTINHAKSLVFLSGVKQDIKAAITNCFGFKPGTLPVKYLGVPLISSRLTHQHYMPLLERIITRIKLWTAASLSY AGRLQLIKSTLFSIQVYWSSMFMLPCSIIRKIESTLAAFLWKGTSLTSLGAKVAWDSLCYPLKEGGLGIKKIKIWNKAAILKHIWRLLTEKTSVWVSWVH SVLLRGRCFWFYNAPSNASWSWRKILLSRSWCRGLFSPKIGNGLETFLWLDYWLPNGKRICDILPFRQLSRTGLTCDAKVSSIISEGRWSFPVGHPELQL IWNSIQFFPRPHQPDICNWKGLHSGKFSIDSAWELLRDKRPINSIFHLIWFPDHIPRHAFILWIASMGRLHIKDRLRSFQVISSATCSLCGLHDETHDHL FFECSYSAMVWNTLSEKSLINWPSMSFHGLLLWAATSLRDNKVFSHLLARQILSSTLYFVWYERNNRIFNQASKTPQVLSGEIIETIRSVLMEKDQRKIP NNLKSIWGLQAAEDMQPDMMRPLTAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24255			RNA-directed DNA polymerase (r...		Potri.010G000101 [exp]	0	1
					Potri.013G160350 [exp]	3.16	0.8239
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	19.39	0.8080
AT4G37860			SPT2 chromatin protein (.1)		Potri.001G257300 [exp]	19.79	0.7725
					Potri.004G133550 [exp]	22.91	0.7520
AT4G02550			unknown protein		Potri.006G191850 [exp]	27.82	0.7386
AT2G20650			RING/U-box superfamily protein...		Potri.001G400600 [exp]	28.56	0.7029
					Potri.001G248704 [exp]	30.85	0.6931
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.017G112400 [exp]	31.60	0.6701
					Potri.001G020080 [exp]	40.69	0.7709
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053720 [exp]	42.00	0.7523

Compare expression of checked genes

Potri.010G000101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.