Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATSEB1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16120 854 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G16860 800 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT5G49270 784 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 696 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 664 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT3G29810 136 / 2e-34 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 134 / 1e-33 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 130 / 1e-32 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 126 / 6e-31 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 122 / 2e-29 COBL6 COBRA-like protein 6 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125300 [exp] 806 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.001G419000 [exp] 689 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.011G135200 [exp] 689 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.004G219200 [exp] 147 / 2e-38 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117200 [exp] 141 / 3e-36 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 137 / 4e-35 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 136 / 1e-34 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 135 / 3e-34 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 133 / 2e-33 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016847 [exp] 943 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 928 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10025045 [exp] 712 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10011160 [exp] 667 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 665 / 0 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10010022 [exp] 615 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10031972 [exp] 149 / 5e-39 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 149 / 8e-39 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 148 / 2e-38 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 148 / 2e-38 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.010G001100.1 pacid=42798016 polypeptide=Potri.010G001100.1.p locus=Potri.010G001100 ID=Potri.010G001100.1.v4.1 annot-version=v4.1 ATGTTGTCTTTAACCTTAAATCTCCTGTTTTTCTTCATCTTTGCAACAATACCCTTCGCCAACTCCCAAACACCAACACCAGAAGCACCAGCTCCAGCAT CCAGTACTTGCAATGGCATCTTCTTATCATACCAGTATAATGGGGGATCACAGATAAAACCAACAGACCCCACACTCCAACCTTACAGATTTAAATCAAC GCTAACTGTGCAAAACAACGGCCGTGATGAACTTAAATCATGGAAGGTTTTTGTGGGTTTTCAAAATGATGAGCTTTTAGTTTCTGCTTCTAATGCTGTT CTCGCCGATGGTACTACCTTGCCTGCTGCTGTTGGGAATGGTACTGTTTTCGCTGGTTTCCCAATGACTGATTTGAAAACTGCTATTGAGACTGCTGGCG ATGACACTCAAACTAGTGTCCAGGTTCAGTTTTTAGGGACTCAGTTCGGAGTTCCTTTGAAGGATGTGCCTTGGCCTTCTAATATTTCTCTTGCTAATGA TGGCTTTGTTTGCCCTGCCACTACTAAAGAAGGAAGTGTCATGTTTGTTTGCTGCACTAGAGACCCAAAATTTAAAACGAACATCACTTTAGATGAAGAG TTCTTGCCCCGCCAGAATGGAGATCTTACAATCATGTATGACGTGATCAGAACATACGACTCGAGTTATTGGGCACAGGTTTCTATTGCAAACCATAATC CTCTTGGTCGACTTGATAACTGGAAATTGAGCTGGGACTGGATGAAGGATGAATTTATCAATTCCATGAAAGGGGCTTATCCTTACATTCTTGATTCAAC TGACTGCATATTTGGTCCTCAAGGTAAATACTACGGGGAACTAGACTTTTCCAATGTATTAAACTGCGAGAGAAGGCCAACGATAGTTGATTTGCCTCCA ACAAAGGCTAATGACACAACCCTTGGATTGATCCCTTTTTGTTGCCGAAATGGTACTATCTTGCCACCATCCATGGATCCAAGCAAGTCGACCTCAGCTT TCCAGCTTCAGGTTTTTAAAATGCCTCCAGATCTCAATCGCTCTCAGATCTCACCTCCACAGAACTGGAAGATCAATGGCACACTTAACCCTGATTATCA ATGTGGACCTCCAGTTAGGGTGAGCCCTAGCCAATTCCCTGATCCATCTGGCTTACCAGCAAATAAAACTGCAGTTGCCAGCTGGCAGGTGGTGTGTAAT ATCACCCATCCCAAGGGAGTAAGCCCTAGATGCTGTGTTTCATTTTCTGCTTACTACAACGATTCTGTTATCCCTTGCAACACTTGTGCTTGTGGGTGCC CTAGTAATACTGCCCGTACTTGCAGTGCTACTGCTCCAGCTGTTCTTCTTCCACCACAGGCACTTCTCGTTCCTTATGAGAATCGGACTGCCATGTCTGT AGCTTGGTCTGCTCTCAAACATCGGGCTGTGCCAAACCCATTTCCTTGTGCAGATAATTGTGGAGTTAGTATCAACTGGCACTTGTTTACTGATTATAAC CGTGGATGGAGTGCAAGAATCACACTCTTCAATTGGCAAGAAACTTCATTCCCTGATTGGTTTGCTGCAGTGCAATTGGACAAAGCTGCTGCTGGTTTTG AAGCTATGTACTCATTCAATGGAAGCATGTTGGAGATGGATGGTGTCAACAACACCATATTAATGGAGGGGCTTCCAGGGTTGAACTATCTTGTGGCAGA GACTGATGGAGCCAGCCCACAAAAGGATCCCAGGGTTCCTGGAAAACAACAGACAGTGATCTCATTCACTAAGAAAAATATACCAGGAGTAAATATTGCT GCTGGAGATGGGTTTCCTACAAAAGTGTTCTTCAATGGGGAAGAGTGCTCACTCCCTTCGATATACCCAACAAGCAACAGCAATGGAAAGGGATCGACCA TGATAGTATCAATTCTCCTGGCAGCTGTGGTGGTGTTGTTGATACAGCAATAG
AA sequence Show only first row Show all	>Potri.010G001100.1 pacid=42798016 polypeptide=Potri.010G001100.1.p locus=Potri.010G001100 ID=Potri.010G001100.1.v4.1 annot-version=v4.1 MLSLTLNLLFFFIFATIPFANSQTPTPEAPAPASSTCNGIFLSYQYNGGSQIKPTDPTLQPYRFKSTLTVQNNGRDELKSWKVFVGFQNDELLVSASNAV LADGTTLPAAVGNGTVFAGFPMTDLKTAIETAGDDTQTSVQVQFLGTQFGVPLKDVPWPSNISLANDGFVCPATTKEGSVMFVCCTRDPKFKTNITLDEE FLPRQNGDLTIMYDVIRTYDSSYWAQVSIANHNPLGRLDNWKLSWDWMKDEFINSMKGAYPYILDSTDCIFGPQGKYYGELDFSNVLNCERRPTIVDLPP TKANDTTLGLIPFCCRNGTILPPSMDPSKSTSAFQLQVFKMPPDLNRSQISPPQNWKINGTLNPDYQCGPPVRVSPSQFPDPSGLPANKTAVASWQVVCN ITHPKGVSPRCCVSFSAYYNDSVIPCNTCACGCPSNTARTCSATAPAVLLPPQALLVPYENRTAMSVAWSALKHRAVPNPFPCADNCGVSINWHLFTDYN RGWSARITLFNWQETSFPDWFAAVQLDKAAAGFEAMYSFNGSMLEMDGVNNTILMEGLPGLNYLVAETDGASPQKDPRVPGKQQTVISFTKKNIPGVNIA AGDGFPTKVFFNGEECSLPSIYPTSNSNGKGSTMIVSILLAAVVVLLIQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	0	1	ATSEB1.1
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	1.00	0.8857	Pt-XTH3.1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	2.00	0.8775
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	2.00	0.8790
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	2.64	0.8649
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.004G175500 [exp]	3.16	0.8513
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	3.46	0.8378
AT1G45688			unknown protein		Potri.014G026800 [exp]	4.00	0.8587
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	5.19	0.8788
AT3G24630			unknown protein		Potri.018G082300 [exp]	5.47	0.8702
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	6.48	0.8106	GAE1.1

Compare expression of checked genes

Potri.010G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.