Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18500 636 / 0 Protein kinase superfamily protein (.1.2) AT3G17420 578 / 0 GPK1 glyoxysomal protein kinase 1 (.1) AT1G56720 577 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09440 560 / 0 Protein kinase superfamily protein (.1) AT2G42960 550 / 0 Protein kinase superfamily protein (.1) AT3G59110 550 / 0 Protein kinase superfamily protein (.1) AT4G01330 449 / 7e-155 Protein kinase superfamily protein (.1.2) AT1G01540 447 / 2e-154 Protein kinase superfamily protein (.1.2) AT4G02630 431 / 5e-148 Protein kinase superfamily protein (.1) AT4G34500 426 / 2e-146 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214200 [exp] 778 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G003300 [exp] 669 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 640 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G059000 [exp] 572 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 570 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 449 / 2e-154 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 435 / 2e-149 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G154000 [exp] 425 / 1e-145 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 425 / 1e-145 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006215 [exp] 607 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001423 [exp] 568 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 567 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 547 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 542 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10036863 [exp] 525 / 0 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036386 [exp] 444 / 3e-153 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 443 / 2e-152 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 442 / 1e-151 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10007919 [exp] 439 / 3e-151 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G001600.1 pacid=42799140 polypeptide=Potri.010G001600.1.p locus=Potri.010G001600 ID=Potri.010G001600.1.v4.1 annot-version=v4.1 ATGGCTTCTGATCTTAAGAATAGCCTAACCAAGGAATACGTTGGCATGGAGTTGTGGGTGATAATTGTCGTCTGTCTGGGACTGGTTTGTGTATTTGTCC TGGTTGTTTCACTGTGGCTATCGTTTAGAAAGAAATCGAGAAGAGAAAATAACATGCCTCCTGTTAGCTATATGCCTAAAGTTTCAGAGGAGATTAAAGA GATTGGTGTTGATCAAAATTCAGCAAATAATGATGGTTTCCCCAGCCTTCATGACAAGTTCGGTGATAAAGAAGAAGCAGATAAAGTATTGATCCAACTA GAAAATGGTGATGATAGCAGCCAATCAGGCTCCTTTAATCATGTCGAGAAAGTAGGTGTTGGGTCTCAATCAGGAGAAGAGGGGGGCACCAAGGTAGCTT CTGTCCACAGGCCTTCTTCACATCCTTTGACCGCACCTTCACCTCTGTCTGGCCTGCCTGAATTTTCACAGTTGGGATGGGGGCATTGGTTTACCCTCAG AGATCTGCAAGTTGCAACAAACCGATTTTCCAAGGATAACATTATTGGCGATGGTGGATATGGAGTTGTCTATCAGGGTCATATGATTAATGGGACTCCT GTGGCTGTTAAGAAGCTCCTTAACAATCCAGGACAAGCTGATAAAGATTTTAGAGTTGAAGTGGAGGCTATTGGTCATGTACGTCATAAAAACCTTGTTC GACTTCTGGGGTATTGCATGGAAGGAACCCAGAGGATGTTGGTATATGAGTATGTCAACAACGGCAATTTAGAGCAATGGCTCCGTGGAGGTATGCGTCA ACATGGATATCTTACGTGGGAGGCTCGCATGAAAATTCTCCTTGGCACTGCTAAGGCGCTGGCTTACTTGCATGAGGCCATTGAGCCAAAAGTGGTGCAT CGAGACATAAAATCAAGCAACATATTGATCGATGACAACTTCGATGCTAAGATATCTGATTTTGGTCTGGCCAAATTGCTGGGTGCTGGGAAAAGTCATA TTACTACTAGAGTAATGGGTACCTTTGGTTATGTTGCTCCGGAATATGCCAACTCTGGCCTTTTGAATGAGAAAAGTGATGTTTATAGCTTTGGGGTCGT GCTTTTGGAAGCAATTACAGGGAGAGATCCAGTGGATTATGATCGCCCTGAGAATGAGGTAAATCTGGTGGAATGGTTGAAAATGATGGTTGCAGGAAGG CGCTCAGAAGAGGTGGTAGACCCCATGATAGAGAATAGACCAGCAACAAGTGCCCTTAAACGGGCTCTTCTAACTGCTTTAAGATGTGTTGATCCAGATG CTGAAAAAAGACCAAAGATGAGTCAAGTAGTTCGCATGCTTGAATCAGAGGAGTATCCTATACCTAGACAGGATCGGAGGCGCTGGAGAAGCCATGCAGG GGAGGGTGAGACAGCCTAA
AA sequence Show only first row Show all	>Potri.010G001600.1 pacid=42799140 polypeptide=Potri.010G001600.1.p locus=Potri.010G001600 ID=Potri.010G001600.1.v4.1 annot-version=v4.1 MASDLKNSLTKEYVGMELWVIIVVCLGLVCVFVLVVSLWLSFRKKSRRENNMPPVSYMPKVSEEIKEIGVDQNSANNDGFPSLHDKFGDKEEADKVLIQL ENGDDSSQSGSFNHVEKVGVGSQSGEEGGTKVASVHRPSSHPLTAPSPLSGLPEFSQLGWGHWFTLRDLQVATNRFSKDNIIGDGGYGVVYQGHMINGTP VAVKKLLNNPGQADKDFRVEVEAIGHVRHKNLVRLLGYCMEGTQRMLVYEYVNNGNLEQWLRGGMRQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVH RDIKSSNILIDDNFDAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPVDYDRPENEVNLVEWLKMMVAGR RSEEVVDPMIENRPATSALKRALLTALRCVDPDAEKRPKMSQVVRMLESEEYPIPRQDRRRWRSHAGEGETA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18500			Protein kinase superfamily pro...		Potri.010G001600 [exp]	0	1
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.017G000300 [exp]	2.82	0.9278	Pt-MTHFR1.1,MTHFR2
AT3G04100	MADS	AGL57	AGAMOUS-like 57 (.1)		Potri.009G045900 [exp]	4.69	0.8952
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Potri.005G134900 [exp]	4.89	0.8924	LBD36.2
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	5.47	0.9251	CAld5H/F5H4,Pt-FAH1.4
AT2G47360			unknown protein		Potri.014G119900 [exp]	6.48	0.9251
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.009G152800 [exp]	6.92	0.9220
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	8.06	0.9245
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	13.26	0.9172	C4H2,CYP73.2
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.017G059400 [exp]	14.07	0.9097	Pt-SAHH.2
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	16.12	0.8991	Pt-4CL.3,Ptr4CL3

Compare expression of checked genes

Potri.010G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.