Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NPSN12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17440 428 / 1e-153 ATNPSN13, NPSN13 novel plant snare 13 (.1.2) AT1G48240 420 / 2e-150 ATNPSN12 novel plant snare 12 (.1) AT2G35190 309 / 1e-106 NSPN11, ATNPSN11, NPSN11 novel plant snare 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085200 [exp] 341 / 4e-119 AT2G35190 391 / 6e-139 novel plant snare 11 (.1) Potri.001G149200 [exp] 323 / 5e-112 AT2G35190 389 / 4e-138 novel plant snare 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017116 [exp] 421 / 2e-150 AT3G17440 410 / 6e-146 novel plant snare 13 (.1.2) Lus10018338 [exp] 411 / 1e-145 AT3G17440 375 / 2e-131 novel plant snare 13 (.1.2) Lus10003004 [exp] 317 / 1e-109 AT2G35190 366 / 5e-129 novel plant snare 11 (.1) Lus10011034 [exp] 255 / 7e-86 AT2G35190 274 / 2e-93 novel plant snare 11 (.1) Lus10000163 [exp] 102 / 8e-28 AT3G17440 103 / 3e-29 novel plant snare 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF12352 [poplar] [flax] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Potri.010G001900.1 pacid=42799066 polypeptide=Potri.010G001900.1.p locus=Potri.010G001900 ID=Potri.010G001900.1.v4.1 annot-version=v4.1 ATGGCGAGCGAATTGCAGATGAGTCCGCAATTGGAGCAGATCCATGGTGAAATCAAAGACAACTTTCGAGCTCTCTCAAATGGCTTCCAGAGGCTAAACA ATATTAAAGATTCTAATAGACAAAGTAAACAGCTGGAGGAACTTACTGGGAGGATGAAGGAGTGTAAACGGTTGATTAAAGAGTTTGACCGTGAAATTAA AGTTGAGGAGAGCAAAAATCCTCCTGAAGTAAATAAGCAACTCAATGATGAGAAGCAATCCATGATAAAAGAGCTGAACTCCTATGTCCAACTGAGGAAA ACGTATATGAATAGCCTTGATAACAAAAGAGTTGAACTCTTTGACATGGGAGCTGGAGCAAGTGAACCTATGGCTGAAGAAAATGTTCGAATGGCATCAG CTATGTCAAATCAAGAACTTGTTGATGCTGGGATGAAGACAATGAATGAGACTGATCAGGCCATTGAACGCTCTAAACAGGTTGTTGAACAAACAATTGA AGTGGGAACTCAAACTGCTGGTACCTTAAAAGGCCAAACTGAACAAATGGGACGCATTGTTAATGAGCTGGATACTATTCAGTTCTCTATTAAGAAGGCC TCACAGCTAGTGAAGGAGATTGGGAGGCAGGTTGCTACTGATAAGTGCATAATGCTATTTCTACTTCTTATTGTCTGCGGTGTAATAGCCATAATCATTG TGAAGATTGTCAACCCTAGCAACAAAGATATCAGGGACATTCCTGGACTGGCTCCACCAGCCCCCTCAAGGAGGCTGTTATAA
AA sequence Show only first row Show all	>Potri.010G001900.1 pacid=42799066 polypeptide=Potri.010G001900.1.p locus=Potri.010G001900 ID=Potri.010G001900.1.v4.1 annot-version=v4.1 MASELQMSPQLEQIHGEIKDNFRALSNGFQRLNNIKDSNRQSKQLEELTGRMKECKRLIKEFDREIKVEESKNPPEVNKQLNDEKQSMIKELNSYVQLRK TYMNSLDNKRVELFDMGAGASEPMAEENVRMASAMSNQELVDAGMKTMNETDQAIERSKQVVEQTIEVGTQTAGTLKGQTEQMGRIVNELDTIQFSIKKA SQLVKEIGRQVATDKCIMLFLLLIVCGVIAIIIVKIVNPSNKDIRDIPGLAPPAPSRRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	0	1	NPSN12.1
AT2G15240			UNC-50 family protein (.1)		Potri.001G300100 [exp]	3.31	0.8460
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.001G047100 [exp]	7.81	0.8849	GOS11.1
AT1G18640		PSP	3-phosphoserine phosphatase (....		Potri.012G066200 [exp]	8.12	0.8520	PSP.1
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	15.23	0.8532	UBP20.1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	18.22	0.8836
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	19.79	0.8275
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	22.60	0.8503
					Potri.009G086900 [exp]	24.16	0.7590
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	25.15	0.8650
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	26.38	0.8128	PDF1.3

Compare expression of checked genes

Potri.010G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.