Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PDK.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06483 654 / 0 ATPDHK, PDK pyruvate dehydrogenase kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018337 [exp] 638 / 0 AT3G06483 617 / 0.0 pyruvate dehydrogenase kinase (.1) Lus10017117 [exp] 470 / 6e-167 AT3G06483 461 / 1e-163 pyruvate dehydrogenase kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [poplar] [flax] PF10436 [poplar] [flax] BCDHK_Adom3 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
Representative CDS sequence Show only first row Show all	>Potri.010G002000.1 pacid=42798937 polypeptide=Potri.010G002000.1.p locus=Potri.010G002000 ID=Potri.010G002000.1.v4.1 annot-version=v4.1 ATGGTGGTGATGGCTGCCAAGAAAGCGTGTGAAATGTTGTCAAAGAGCATGTTTGAGGAAGTGCAGAGATGGGGTTGCATGAAACAAACTGGGGTGAGTT TAAGGTACATGATGGAGTTTGGTTCAGTTCCTACCGAGAGGAATTTGTTGATTGCTGCTCAGTTTCTTCATAAAGAATTGCCCATTAGGATTGCCAGGAG AGCTATTGAGCTGGAAACCCTTCCTTATGGCTTATCTGAGAAACCTGCCGTTTTAAAGGTTCGAGATTGGTATCTGGATTCTTTCCGTGATATGAGATCC TTTCCTGAGATCAAGGGTACAAATGATGAGAAGGAGTTTACACAAATGATTAAGGCAATTAAGGTCAGACATAACAATGTGGTTCCAATGATGGCTTTGG GAGTTCAACAGCTGAAGAAAGAGCTGGGTCCAAAGATTGTTCATGAGGATCTTGATGAGATCCATCAGTTTCTTGACCGCTTTTATATGTCAAGAATTGG AATTCGAATGCTTATTGGACAGCACGTGGAGTTGCACAATCCCAATCCCCCTCCTCACTGTGTGGGTTATATTCATACAAAGATGTCTCCAGTTGAGGTA GCACAAAATGCCAGTGATGATGCCCGTGCAATATGTTTACGAGAGTATGGTAGTGCACCTGTTGTTAATATCTACGGGGATCCTAATTTTACATTCCCGT ATGTCCCAACACACTTGCAACTCATGGTATTTGAGTTGGTTAAGAATTCATTGCGTGCTGTCCAAGAACGTCACATGGACTCGGACAGAGTTTCACCGCC TGTTAGAATAATAGTTGCTGATGGCATTGAGGATGTCACTATAAAGGTCTCAGATGAAGGTGGTGGCATAGCAAGAAGTGGCCTTCCTAAAATTTTCACA TATCTCTACAGCACAGCCAGAAATCCTCTGGATGAGGATTCTGATCTTGGAACTGGTGAGGCAGTAATAATGGCTGGATATGGTTATGGGCTTCCAATTA GTCGATTGTATGCTCGGTACTTTGGAGGTGATCTGCAAATTATCTCTATGGAAGGATATGGAACTGATGCATATCTTCATCTGTCTCGATTGGGAGATTC ACAAGAACCCTTGCCATGA
AA sequence Show only first row Show all	>Potri.010G002000.1 pacid=42798937 polypeptide=Potri.010G002000.1.p locus=Potri.010G002000 ID=Potri.010G002000.1.v4.1 annot-version=v4.1 MVVMAAKKACEMLSKSMFEEVQRWGCMKQTGVSLRYMMEFGSVPTERNLLIAAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDMRS FPEIKGTNDEKEFTQMIKAIKVRHNNVVPMMALGVQQLKKELGPKIVHEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCVGYIHTKMSPVEV AQNASDDARAICLREYGSAPVVNIYGDPNFTFPYVPTHLQLMVFELVKNSLRAVQERHMDSDRVSPPVRIIVADGIEDVTIKVSDEGGGIARSGLPKIFT YLYSTARNPLDEDSDLGTGEAVIMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Potri.010G002000 [exp]	0	1	Pt-PDK.1
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.016G037600 [exp]	1.00	0.8775
AT1G51340			MATE efflux family protein (.1...		Potri.009G053700 [exp]	1.41	0.8750
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.007G098400 [exp]	7.07	0.8387
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Potri.006G078700 [exp]	10.19	0.7934
AT5G09680		RLF	reduced lateral root formation...		Potri.001G263800 [exp]	17.77	0.7779
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.001G314800 [exp]	17.83	0.7928
AT5G63520			unknown protein		Potri.012G100500 [exp]	18.16	0.8074
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	20.00	0.8271
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.019G040400 [exp]	20.14	0.7894
AT5G47740			Adenine nucleotide alpha hydro...		Potri.012G084700 [exp]	21.16	0.8292

Compare expression of checked genes

Potri.010G002000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.