Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30495 216 / 6e-72 Fcf2 pre-rRNA processing protein (.1.2) AT1G54770 201 / 3e-66 Fcf2 pre-rRNA processing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206400 [exp] 341 / 3e-121 AT5G30495 211 / 4e-70 Fcf2 pre-rRNA processing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031040 [exp] 263 / 1e-90 AT5G30495 201 / 6e-66 Fcf2 pre-rRNA processing protein (.1.2) Lus10035425 [exp] 263 / 2e-90 AT5G30495 198 / 7e-65 Fcf2 pre-rRNA processing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08698 [poplar] [flax] Fcf2 Fcf2 pre-rRNA processing
Representative CDS sequence Show only first row Show all	>Potri.010G002100.1 pacid=42799166 polypeptide=Potri.010G002100.1.p locus=Potri.010G002100 ID=Potri.010G002100.1.v4.1 annot-version=v4.1 ATGATTGGGCTTTCATGGCAGCCAAAGTTGCCAACTTTATCGTCGTCTACAACAAAAAATATCAAGAACTCAGTTGAGCCTGAAAGCAGCAGTGCACTTT GGAAAACCAATTCACAGCTTGTTGATGTCTTATTTGTGCCACCCAATGATCCCATTAAGTTAAACAAGTTACTTAAAAGCCAACGCAAAGATACACTAGG CAAGGATTGGTTTGATATGCCTGCCTCAACTATAACTCCAGAGTTGAAAAGGGATCTCCAGCTGCTTAAGCTAAGGAGTGCTATTGATCCGAAGAGACAC TACAAGAGGGGTGATTCAAAGTCAAAAGAGCTACCTAAATATTTCCAGGTGGGCACAGTTGTAGAATCTGCAACAGATTTCTACTCTGGTAGGCTAACTA AGAAGGAGAGGAAAGTAACCATTGCAGATGAACTGCTTTATGATCAAACTTTCAGTGCTTACAGGAAGCGTAAGGTTCGAGAGATTGAGGAAAAGAATCG CCCAGGTGGAAATGATAAATGGAAGATAAAGGGTAAACAATCCTGGAAACGTGCCAAGGAAAGAAGACACTAG
AA sequence Show only first row Show all	>Potri.010G002100.1 pacid=42799166 polypeptide=Potri.010G002100.1.p locus=Potri.010G002100 ID=Potri.010G002100.1.v4.1 annot-version=v4.1 MIGLSWQPKLPTLSSSTTKNIKNSVEPESSSALWKTNSQLVDVLFVPPNDPIKLNKLLKSQRKDTLGKDWFDMPASTITPELKRDLQLLKLRSAIDPKRH YKRGDSKSKELPKYFQVGTVVESATDFYSGRLTKKERKVTIADELLYDQTFSAYRKRKVREIEEKNRPGGNDKWKIKGKQSWKRAKERRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.010G002100 [exp]	0	1
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	1.41	0.9048
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Potri.001G359400 [exp]	1.73	0.9001
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	1.73	0.9090
AT1G79200			unknown protein		Potri.005G095700 [exp]	2.23	0.8967
AT1G79070			SNARE-associated protein-relat...		Potri.008G043200 [exp]	2.82	0.8975
AT3G27100			unknown protein		Potri.001G330400 [exp]	3.74	0.8965
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	4.89	0.8924
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Potri.010G201600 [exp]	5.38	0.8521
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	6.32	0.8893
AT1G21150			Mitochondrial transcription te...		Potri.001G035600 [exp]	6.40	0.8389

Compare expression of checked genes

Potri.010G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.