Plant FIBer expression Database

Potri.010G002200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09520 71 / 9e-15 unknown protein
AT3G17460 62 / 1e-11 PHD finger family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G206600
[exp]
245 / 8e-83 AT3G17460 59 / 1e-10 PHD finger family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005290
[exp]
69 / 2e-14 AT1G09520 130 / 4e-37 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G002200.2 pacid=42797530 polypeptide=Potri.010G002200.2.p locus=Potri.010G002200 ID=Potri.010G002200.2.v4.1 annot-version=v4.1
ATGAAGCAAGAACGAGACCACCAGTTCGAGTGCGGAATATGCGGGACTGAAGACCGCTATCTCCTCCACAACGTCCGCCACCGTACCCCTTCCTACCGCC
GCCTCTGCACTAACTGTCTCTTAAAAGACCACCGCGGTCTCTTTTGCCCTTTCTGCTTTATTGTCTATGAAGAACCACTCCAAAATGATCGATCCATGTG
CAACAAATGCCCTTCTATCGCTCACAAACCTTGCATCCCTTCCAATTACCCTCACCACACTCCCTTCATCTGCCCCTCTTGCTCCTCCCCCAGTTTCTCC
TTCTTTAACCCTACCAGAAACGGAGATTCTTCCTCCGGGAGGTTCATCGATAAAGACTCCGCCAGAGCGCTTGTTGCTGCCGCCAAGATTGCTTCCATTT
CCATGACGAAAGCGGCCGCGCTGGCCAGGGTTGAAGCTGAGAAAAGGGTTAGGGAAGCTACTTATGCTAAGAAGAGAGCTAGAGAAGCACTTGAAAGGCT
AGCTTATTTGGCTGCTAAAGAAAATGAGATGATGGAGGATATTAAGGGAGGAGGAGTTGATGATGCTGCTAATAAGGGAGGAAATAGTAATGGGGTTTAT
CTGGGTTATCCTCCTTCTCAGATAACAGGGCAGCAGCAGCAGCAACAAGGGACTCTGAAATGA
AA sequence
>Potri.010G002200.2 pacid=42797530 polypeptide=Potri.010G002200.2.p locus=Potri.010G002200 ID=Potri.010G002200.2.v4.1 annot-version=v4.1
MKQERDHQFECGICGTEDRYLLHNVRHRTPSYRRLCTNCLLKDHRGLFCPFCFIVYEEPLQNDRSMCNKCPSIAHKPCIPSNYPHHTPFICPSCSSPSFS
FFNPTRNGDSSSGRFIDKDSARALVAAAKIASISMTKAAALARVEAEKRVREATYAKKRAREALERLAYLAAKENEMMEDIKGGGVDDAANKGGNSNGVY
LGYPPSQITGQQQQQQGTLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09520 unknown protein Potri.010G002200
[exp]
0 1
AT1G07030 Mitochondrial substrate carrie... Potri.009G077600
[exp]
2.23 0.9084
AT1G36280 L-Aspartase-like family protei... Potri.010G193400
[exp]
3.87 0.9019
AT2G32840 proline-rich family protein (.... Potri.001G229800
[exp]
4.89 0.9046
AT2G32600 hydroxyproline-rich glycoprote... Potri.006G121300
[exp]
6.70 0.8898
AT5G56740 HAG02, HAC7, HA... histone acetyltransferase of t... Potri.013G068200
[exp]
7.07 0.8530
AT2G18510 EMB2444 embryo defective 2444, RNA-bin... Potri.007G028300
[exp]
14.00 0.8816
AT5G20700 Protein of unknown function (D... Potri.006G139200
[exp]
16.00 0.8929
AT5G11170 DEAD/DEAH box RNA helicase fam... Potri.006G253100
[exp]
16.30 0.8631
AT3G45260 C2H2ZnF C2H2-like zinc finger protein ... Potri.006G227600
[exp]
16.91 0.8715
AT1G24040 Acyl-CoA N-acyltransferases (N... Potri.010G095800
[exp]
18.43 0.8648

Potri.010G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.