Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17465 484 / 8e-174 RPL3P ribosomal protein L3 plastid (.1) AT2G43030 155 / 3e-45 Ribosomal protein L3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207000 [exp] 599 / 0 AT3G17465 478 / 1e-171 ribosomal protein L3 plastid (.1) Potri.013G070100 [exp] 164 / 1e-48 AT2G43030 369 / 7e-130 Ribosomal protein L3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033666 [exp] 473 / 3e-169 AT3G17465 455 / 2e-162 ribosomal protein L3 plastid (.1) Lus10017709 [exp] 462 / 3e-165 AT3G17465 450 / 2e-160 ribosomal protein L3 plastid (.1) Lus10013640 [exp] 152 / 5e-44 AT2G43030 365 / 6e-128 Ribosomal protein L3 family protein (.1) Lus10001337 [exp] 152 / 6e-44 AT2G43030 365 / 2e-128 Ribosomal protein L3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [poplar] [flax] EFTPs PF00297 [poplar] [flax] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Potri.010G002300.1 pacid=42799721 polypeptide=Potri.010G002300.1.p locus=Potri.010G002300 ID=Potri.010G002300.1.v4.1 annot-version=v4.1 ATGCCGGCCTTATCGAGAGGCCTCATCTCTCGTCTCCATCAGATACTGTCACTCAATTCAAGAACAACACAGTCAGCTTCACCTCCAATAGCAACAACAC AGTTGTACCTCTTGAGAAGATTTAGCAGTGATGCTCTGGTTGACGGTTCTGAGATTCAGTACCAACAACCAAGCCGGATCATTGAAGCAAAACCGGGTGT AATGACCCCGAATTCAAAGCGAACCGGAGTGATTGCGGTCAAATGTGGAATGACTGCTCTTTGGGATAAATGGGGTGCTAGGATTCCCATTACTGTCTTA TGGGTCGATGATAATATTGTCTCTCAAGTTAAAACTGTTGAAAAAGAAGGTTTTTTTGCTTTACAGGTTGGTTGTGGGCAGAAGAAAGAGAAGCATTTGA CGAAGCCGGAAGTGGGTCATTTTAGAGCTCAAGGTGTCCCCATGAAGAGGAAATTAAGGGAGTTTCCTGTTACTGAAAATGCTCTTCTTCCTGTTGGTAC TTGCATTGGTGTTCGACATTTTGTTCCTGGTCAATTTGTTGACGTCGCTGGAATCACTATGGGCAAAGGTTTTCAGGGTGGTATGAAAAGGCATGGGTTT AAAGGAGGGCCAGCAAGTCATGGTGCATCCTTATCACATCGAAGTATTGGTTCTACAGGTCAGAGGGATGCTCCCGGGAAGGTATTTAAAGGCAAAAAGA TGCCTGGGCGCATGGGTGGAGTGCAGAGAACAGTTAAAAATGTTTGGGTCTACAAAATAGATCCAGCAAGGAATCTGATGTGGGTGAAAGGCCAAGTCCC TGGCGCTGAAGGGAACTTTGTGTTCATAAAAGATTCTGTTTTCAAGAAACCTGATATTCAGATACTTCCATTCCCAACTTACTTTGAAACAGAAGATGAT GATAATTCAGAACCTCTAGTTGCCGATCTTGGTGAAGTAGATCCATTTATGGTTGCAGATTAA
AA sequence Show only first row Show all	>Potri.010G002300.1 pacid=42799721 polypeptide=Potri.010G002300.1.p locus=Potri.010G002300 ID=Potri.010G002300.1.v4.1 annot-version=v4.1 MPALSRGLISRLHQILSLNSRTTQSASPPIATTQLYLLRRFSSDALVDGSEIQYQQPSRIIEAKPGVMTPNSKRTGVIAVKCGMTALWDKWGARIPITVL WVDDNIVSQVKTVEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTENALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQGGMKRHGF KGGPASHGASLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVFKKPDIQILPFPTYFETEDD DNSEPLVADLGEVDPFMVAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	0	1	Pt-RPL3.3
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	2.23	0.8345
AT5G60390			GTP binding Elongation factor ...		Potri.010G218700 [exp]	5.47	0.8295
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	8.71	0.8045
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	8.83	0.8073
AT4G20980			Eukaryotic translation initiat...		Potri.004G044500 [exp]	10.39	0.7892
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	10.72	0.8034
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.012G006700 [exp]	12.96	0.7788
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	13.56	0.7908	GLYRS.2
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	14.00	0.7735
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.009G149400 [exp]	15.49	0.7968	HD2.2,HDT901

Compare expression of checked genes

Potri.010G002300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.