Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17470 688 / 0 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) AT3G14050 152 / 3e-39 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT1G54130 147 / 2e-37 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT4G02260 137 / 1e-33 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT2G43290 60 / 6e-10 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 57 / 2e-09 Calcium-binding EF-hand family protein (.1) AT5G17480 54 / 4e-09 APC1 pollen calcium-binding protein 1 (.1) AT1G05990 54 / 3e-08 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G03430 51 / 3e-08 Calcium-binding EF-hand family protein (.1) AT4G12860 52 / 1e-07 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168200 [exp] 142 / 8e-36 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 142 / 2e-35 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.003G066000 [exp] 141 / 2e-35 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.013G089000 [exp] 79 / 3e-15 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.017G126400 [exp] 50 / 6e-08 AT3G03430 132 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.009G102500 [exp] 53 / 7e-08 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 53 / 1e-07 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 52 / 2e-07 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.005G183300 [exp] 51 / 2e-07 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028191 [exp] 682 / 0 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 352 / 2e-114 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10022102 [exp] 145 / 2e-37 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 140 / 1e-34 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 133 / 1e-32 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 132 / 2e-32 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 118 / 5e-28 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 72 / 1e-12 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10019863 [exp] 53 / 9e-08 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10014050 [exp] 53 / 9e-08 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF04607 [poplar] [flax] RelA_SpoT Region found in RelA / SpoT proteins CL0237 [poplar] [flax] HD_PDEase PF13328 [poplar] [flax] HD_4 HD domain CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.010G002400.2 pacid=42798995 polypeptide=Potri.010G002400.2.p locus=Potri.010G002400 ID=Potri.010G002400.2.v4.1 annot-version=v4.1 ATGGAAATGGAGCTCACCTCTCTTCAACTCCTTCCAATCCAGAGAATTCGCAGAGCTCCAACACATGAAATTGTAAGCTTATCTAGTCCTCCGAGTTGCA GAAGGAGACAACGGAGATGGAAGATATCACTGAGAGCGACGGCGGAGACTACAGCGTTGGAGCAGGCGGGAGGGAAGATGGTGGTGGAGCTAGTAGGAGC ATTCAATGAGCTAACGGAGAGAATGAATGTGCTTTCAACAAGCTCTTCTAGAATACTCTTCAAAGCTCTAAAGCTTTCCATTCCTATTTTACAGAACTTA CCTCTCTCTCCTGATCACCGCTCTCCTCTCAATAAAGCCTTGTCTCTCGCTCTCCTCCTCGCCGATCTTCAGATGGATGCGGAAGTAATTTCTGCGGGAA TATTGATGCAAGTGTTCGAAACTAGTGCGATAACAATTCGTGAAGTGAGGGATAAAATAGGGAGTGGTACGGCACATTTGTTACACGAAAGCTGGAGAAT GAAAAACAGTCCTTCAAGAATTGAGGTTTTGGATGATGATAGTGCTTATGCATTGAGAAAGTTTTGCCTTACTTATTATGATATTCGTGCTGTAATTTTG GAATTGGCTACTAAGCTTGATATTATGAGACATTTAGATTACTTGCCGAGGTATCAACAGCAAATGCTGTCTCTTCAAGTTATGAAGATTTATGCTCCGT TAGCTCATGCTGTAGGGACTAATTGGTTGTCATTGGAGTTGGAAGATTTGTCGTTTCGGTATCTGTTTCCTTATTCGTATTTATATGTGGATACGTGGTT GCGTAGTCATGTAACGGGTGGGAGGCCGTTGATTGATATGTATGTAGAAGAGTTGAGACAATCTTTGAAGGCTGATCCTGTTTTGGCTGATATGGTGGAG GATGTTTTGGTTAAGGGACGGTATAAGAGTCGGTATAGTATGATGAAGAAGCTTTTGAAAGATGGTCGGAAGCCTGAAGAAGTGAATGATGTTCTGGGTT TGCGAGTTGTATTGAAGCCTAAGTCTGGAGAAATAGGCGAGAAAGCATGCTATAGGACGTGTGGGATTGTTCGATCTTTGTGGAATGAAATCCCTCATAG AACAAAAGATTATATTGCCAGGCCTAAAGCAAATGGGTATAGGAGTTTACACATGGCAGTTGATGTGAGTGATAATGGCAAGACCAGACCACTAATGGAA ATTCAGATAAGGACTGTAGAGATGGATTTGCTGGCAGTTGGTGGGACGGCATCCCATTCATTGTACAAAGGCGGCCTTGCTGATCCTGATGAGGCAAAGC GGCTCAAGGCCATAATGATGGCTGCAGCTGAACTTGCAGCACTACGTCTTAAAGATCTCCCATCTGCCAAAGGTATTGCGATTGATCAGAGAGATCGAGT CTTTCAGCTTCTCGATAAAAACGGTGATGGGCGGATTAGCATTGAAGAACTTATGGAAGTTATGGAAGAGCTGGGTGCCCCTGGAGAGGATGCACGGGAG ATGATGCAGCTCCTTGATTCAAATAGTGATGGCTCTCTAAGCCCCGATGAATTCGATACCTTTCAGAAACAGGTTGAATTCATGCATAATTTAGAGGACA AAGATCATCAGTACAGAAGCATGTTGAATGAGAAACTTCAAATGGCAGAGGACAGTGGTTTGATTCAGGTATATAGTAAAGAGCTTGGCATCAGGCTTGC AAGTTAA
AA sequence Show only first row Show all	>Potri.010G002400.2 pacid=42798995 polypeptide=Potri.010G002400.2.p locus=Potri.010G002400 ID=Potri.010G002400.2.v4.1 annot-version=v4.1 MEMELTSLQLLPIQRIRRAPTHEIVSLSSPPSCRRRQRRWKISLRATAETTALEQAGGKMVVELVGAFNELTERMNVLSTSSSRILFKALKLSIPILQNL PLSPDHRSPLNKALSLALLLADLQMDAEVISAGILMQVFETSAITIREVRDKIGSGTAHLLHESWRMKNSPSRIEVLDDDSAYALRKFCLTYYDIRAVIL ELATKLDIMRHLDYLPRYQQQMLSLQVMKIYAPLAHAVGTNWLSLELEDLSFRYLFPYSYLYVDTWLRSHVTGGRPLIDMYVEELRQSLKADPVLADMVE DVLVKGRYKSRYSMMKKLLKDGRKPEEVNDVLGLRVVLKPKSGEIGEKACYRTCGIVRSLWNEIPHRTKDYIARPKANGYRSLHMAVDVSDNGKTRPLME IQIRTVEMDLLAVGGTASHSLYKGGLADPDEAKRLKAIMMAAAELAALRLKDLPSAKGIAIDQRDRVFQLLDKNGDGRISIEELMEVMEELGAPGEDARE MMQLLDSNSDGSLSPDEFDTFQKQVEFMHNLEDKDHQYRSMLNEKLQMAEDSGLIQVYSKELGIRLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Potri.010G002400 [exp]	0	1
AT2G30695			unknown protein		Potri.013G125600 [exp]	4.89	0.9377
AT5G27290			unknown protein		Potri.013G029000 [exp]	5.47	0.9470
AT3G05410			Photosystem II reaction center...		Potri.005G027100 [exp]	5.74	0.9527
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Potri.006G088200 [exp]	7.61	0.9503
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Potri.013G108200 [exp]	8.94	0.9356
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.010G065600 [exp]	25.98	0.9394	RNP1.1
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	27.64	0.9423	RNP1.2
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	29.94	0.9270
AT2G01755			unknown protein		Potri.008G135400 [exp]	31.28	0.9344
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.008G002200 [exp]	35.69	0.9263

Compare expression of checked genes

Potri.010G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.