Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17510 631 / 0 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G48260 597 / 0 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT2G26980 481 / 2e-168 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 475 / 2e-166 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 475 / 1e-165 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 464 / 1e-161 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G35410 441 / 1e-152 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 432 / 3e-149 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G01810 405 / 6e-139 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G45820 399 / 2e-136 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062800 [exp] 490 / 7e-172 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 489 / 3e-171 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.001G222600 [exp] 470 / 3e-164 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 467 / 3e-163 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G177900 [exp] 450 / 2e-156 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 447 / 1e-155 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G096042 [exp] 435 / 4e-150 AT5G57630 535 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.018G130500 [exp] 433 / 8e-150 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G171400 [exp] 431 / 1e-148 AT5G57630 549 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018334 [exp] 493 / 3e-173 AT3G17510 441 / 6e-153 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Lus10042816 [exp] 483 / 3e-169 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 482 / 6e-169 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 451 / 1e-156 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10002692 [exp] 448 / 3e-155 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 433 / 1e-149 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10022590 [exp] 413 / 3e-142 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10032822 [exp] 410 / 7e-141 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10022749 [exp] 395 / 1e-134 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 393 / 8e-134 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF02149 [poplar] [flax] KA1 Kinase associated domain 1 CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G002500.2 pacid=42798484 polypeptide=Potri.010G002500.2.p locus=Potri.010G002500 ID=Potri.010G002500.2.v4.1 annot-version=v4.1 ATGGTGAGAAAGGAGGAGGAGAAGCAGAAGAAGGAGAAGGGAATGCAACTTGGAAAATACGAGCTCGGAAGGACTCTAGGCGAAGGCAATTTCGGGAAAG TTAAACTGGCTAAGAACATTGAGACTGGCCAACCTTTTGCTGTTAAGATTCTTGAAAAGAACAGAATCATCGACCTCAAGATCACCGATCAGATTAAAAG GGAGATTGCAACTTTGAAGCTCCTCAAGCATCCAAACGTTGTCAGATTACATGAGGTCCTAGCAAGCAAATCCAAGATTTATATGGTCCTTGAATATGTA ACTGGAGGGGAATTGTTTGATAGAATCGCATCAAAGGGCAAGCTTCCAGAAGCAGAGGGCAGGAAGATGTTCCAGCAGTTGATTGATGGTGTCAGTTACT GTCATAGCAAAGGTGTTTTTCACAGGGATCTTAAGCTAGAGAATGTTCTTGTTGATGCAAAAGGAAACATCAAGATATCTGATTTTGGACTCAGTGCTTT GCCCCAGCATTTTAGGGATGACGGGTTATTGCATACAACCTGTGGAAGTCCTAACTATGTTGCGCCTGAGATTCTCTCGAATAGAGGTTATGATGGTGCT ACATCAGATATATGGTCATGCGGTGTTATTTTGTATGTAATTCTCACAGGGTACCTGCCTTTTGATGATAGAAATCTTGCTGTTCTATATCAAAAGATCT TCAAGGGGGATGCTCAGGTACCAAAATGGTTGTCACCGGGTGCTAAAAATATGATAAAGAGGATTCTTGATCCCAACCCTGTTACCAGAATAACAACAGC AGATATCAAAGCTGATGAATGGTTTAAGCTGGACTATACTCCGATGGATTCTGCAGAAGAACAAGATGATGTATATATCGACGACGCAGCTTTTTCGATT CAGGAAGCGCCATCAGAAGATGGGAGTCCAAAATCACCCAACCTCATCAATGCTTTTCAATTAATTGGGATGTCCTCATGCCTAGACCTCTCAGGTTTAT TTGAGAAAGAGGATGTTTCTGAGAGGAAGATCAGATTTACATCCAATCATTCTATGAGCGATTTGCTCGAGAAGATAGAGGATATTGTGACGGAGATGGG GTTTCGAGTCCAGAAGAGAAATGGAAGATTTCAAGTGATTCAAGAGCACAGAGGAAAGAAAAGTTCGGGCAGTCTTTCTGTTGCCACAGAGGTGTTTGAG ATTAGCCCATCACTGTATGTAGTTGAATTAAGAAAATCTTATGGAGATTCTTCAGCATACAGACAGTTGTGTACAAAGCTATCAAATGATTTAGGTGTCC CCTCAAGTCCAGGACTGTTGACCACAGAAGTATGA
AA sequence Show only first row Show all	>Potri.010G002500.2 pacid=42798484 polypeptide=Potri.010G002500.2.p locus=Potri.010G002500 ID=Potri.010G002500.2.v4.1 annot-version=v4.1 MVRKEEEKQKKEKGMQLGKYELGRTLGEGNFGKVKLAKNIETGQPFAVKILEKNRIIDLKITDQIKREIATLKLLKHPNVVRLHEVLASKSKIYMVLEYV TGGELFDRIASKGKLPEAEGRKMFQQLIDGVSYCHSKGVFHRDLKLENVLVDAKGNIKISDFGLSALPQHFRDDGLLHTTCGSPNYVAPEILSNRGYDGA TSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDAQVPKWLSPGAKNMIKRILDPNPVTRITTADIKADEWFKLDYTPMDSAEEQDDVYIDDAAFSI QEAPSEDGSPKSPNLINAFQLIGMSSCLDLSGLFEKEDVSERKIRFTSNHSMSDLLEKIEDIVTEMGFRVQKRNGRFQVIQEHRGKKSSGSLSVATEVFE ISPSLYVVELRKSYGDSSAYRQLCTKLSNDLGVPSSPGLLTTEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17510		CIPK1, SnRK3.16	SNF1-RELATED PROTEIN KINASE 3....		Potri.010G002500 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.005G205800 [exp]	11.35	0.8109
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.002G180800 [exp]	21.07	0.7846
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	21.74	0.7482	PtrMsrB3
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	31.55	0.8009
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Potri.008G116700 [exp]	33.22	0.7460
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	34.39	0.7809
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076600 [exp]	40.47	0.7307
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	42.14	0.7189
AT1G73480			alpha/beta-Hydrolases superfam...		Potri.012G041800 [exp]	42.89	0.7270
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G035800 [exp]	42.90	0.7969

Compare expression of checked genes

Potri.010G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.