Plant FIBer expression Database

Potri.010G002600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G122400
[exp]
45 / 3e-05 AT4G36600 92 / 3e-20 Late embryogenesis abundant (LEA) protein (.1)
Potri.007G024000
[exp]
42 / 0.0005 AT4G36600 93 / 1e-20 Late embryogenesis abundant (LEA) protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G002600.1 pacid=42797415 polypeptide=Potri.010G002600.1.p locus=Potri.010G002600 ID=Potri.010G002600.1.v4.1 annot-version=v4.1
ATGATCATGCCTTCCAAGAATGGTACTTGTCGGCTCTCGGTTTTGTTTGTGGCGGGGATACTGGTGATGATGTTTGCCATCAGTTGTAGCTGCTCTGGTG
CTGATCGTTCTTCAACCCCGACAGAAAGCCAAGATTTTGAAGTGATGACGGATGGAATGAAAGAAGCAAGAGGTAAGACAGAAGAGAAAGCAGAAGAAGC
ACAGGAAAAGGCAGAAGAGGATGGTAAAGAAGCCACAGAATCCACCGAGTCATGGGCCGAATGGGCCAAGGAGAAAATCTCTGAAACCATTGGGCGAAAG
CAGGATGATGCCAAGGAGGCTGCTATGAGAGCTTCTGATACAGCCTCTGACACTGCTAAGAAGGCCAAAGACATAGCTTCTGAAGCCACCCAATACGGTG
CAGAAAGGGCAGGTGACATGAAAGATACTGCAACAGAGAAGATTAAAGAAATGGCAAATGCAGCCAAAGAGAAGGTTAGCGAAATGGCAAGTGCATCGAA
AGAAACGATTGCTTCCACAACAGGTGCAACTAAAGAGAAGGCAAGCGAAGCCTCTGGAGCAGCAAAAGAAAAGGCCTATGAAGCAGAGGAAAAGGCAGCA
GAGAAAGCAGAGCAGATGAAGGAGAAGACAGCTCGAAATGCCGAAGAAGCCAAAGAGAAGGCTAAAGAGGCCACAGGTATGGAAAAAGAGAAGGCAGAAG
AGGCAAAGGAGGCAGCAGTCAAGAAAGCTGAAGAAGCCAAAGAGGCGGCTAAAAAAACGCAGAAGAGCGCAACAGAAGAAGACAAGAAAAGGGAAGCTGA
GACAGGGGAGAATCTAAGCTGGGCCAAGGAGAAAGCTAAAGAGAATTATGAGACTGCGAAGCAAAAGGCTGCTGAAACTCTGGAGGCTACAAAGCAGGAG
TCACAGTATATTAAGGAAAAAGTAGGTGGTAGTGGTAAAGAAAGGGATGGAGAGCTTTGA
AA sequence
>Potri.010G002600.1 pacid=42797415 polypeptide=Potri.010G002600.1.p locus=Potri.010G002600 ID=Potri.010G002600.1.v4.1 annot-version=v4.1
MIMPSKNGTCRLSVLFVAGILVMMFAISCSCSGADRSSTPTESQDFEVMTDGMKEARGKTEEKAEEAQEKAEEDGKEATESTESWAEWAKEKISETIGRK
QDDAKEAAMRASDTASDTAKKAKDIASEATQYGAERAGDMKDTATEKIKEMANAAKEKVSEMASASKETIASTTGATKEKASEASGAAKEKAYEAEEKAA
EKAEQMKEKTARNAEEAKEKAKEATGMEKEKAEEAKEAAVKKAEEAKEAAKKTQKSATEEDKKREAETGENLSWAKEKAKENYETAKQKAAETLEATKQE
SQYIKEKVGGSGKERDGEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G002600
[exp]
0 1
AT5G06440 unknown protein Potri.006G201000
[exp]
1.00 0.8180
Potri.013G062301
[exp]
4.47 0.7714
AT3G20640 bHLH bHLH123 basic helix-loop-helix (bHLH) ... Potri.011G129500
[exp]
6.16 0.8115
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Potri.005G135500
[exp]
13.03 0.7355
AT1G13740 AFP2 ABI five binding protein 2 (.1... Potri.008G096500
[exp]
13.03 0.6605
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.008G183600
[exp]
14.69 0.7722
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.008G045300
[exp]
15.29 0.7561
AT1G07175 unknown protein Potri.009G072201
[exp]
15.39 0.6647
AT1G28280 VQ motif-containing protein (.... Potri.004G044800
[exp]
16.94 0.7629
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G013600
[exp]
19.18 0.7356

Potri.010G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.