Plant FIBer expression Database

Potri.010G002800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06960 521 / 0 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
AT2G44640 231 / 1e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G044200
[exp]
245 / 6e-76 AT2G44640 446 / 3e-154 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022978
[exp]
559 / 0 AT3G06960 530 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Lus10043347
[exp]
247 / 2e-76 AT2G44640 447 / 7e-155 unknown protein
Lus10019499
[exp]
243 / 9e-75 AT2G44640 451 / 5e-156 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G002800.2 pacid=42797288 polypeptide=Potri.010G002800.2.p locus=Potri.010G002800 ID=Potri.010G002800.2.v4.1 annot-version=v4.1
ATGAACAAGCTAAGATGGGCAATGGATGGAGGGTTTTGGGATCTGGACAGGTCCACACCCAGAACCCTTGAAGGAGAAGGACGGGCAGTGCCAGGAGAAC
CACTTCCATTGGGTGTTTCAAGAGGTACAAGACTATCAAGACCCAAGCAGATTGACTTCTTTCAGCGTTTTATGTTCGCTCCTTTCATCCCTTCTTATTC
TGCTTCCTCCCATGGCTTGTCTCTCCAACGTGTTCTCGCTCTTCCTTTCACTCAAGACTGGTTTGCTACATTACTAGCTCAATTCAATTTGCAGAAGTTT
GTCTCTTCTTTTAAAAAGAATGGAGCCTTGCAATCTTCACGCCTAGAGAACATTAGGAAACATCTTGAGGATAAGTCCTTATATGCACTTGGATTTTGTT
CAGAGCTCTTGTTAAGTCCTTGTGATACCCTTCTCTTGAGCTTGGATTTTTATGGTGATGATAACAATAAGAAACCTCGTAAGAAAGCAATCTTTCATCA
TAAGTTCCCAAATCACAATTTAAATGTGGAGGCAGTTTGGCCTGGACTTTACATTGACAAGGCCGGTAATTATTGGGATGTACCTTTCTCCATGGCCATT
GATCTGGCGTCTCTTGCTTCTGACTCTGGTGCTAGTTATCATTTCTGTATGCATCATAGTGCCGGTCAGCCTATGCAGCTTGGAGGTGATGAGACCGTTG
AGGTTCCTGCTACACTACTTCCTGGTATCTCTTTGAAAAGTGCTTTTTCCTTAAAGAAAAATGTTGAGATTTGGAGAAGCAATGCTCAGAAGTTGAAGAT
GGTGCAGCCCTTTGATATTTTTCTCTCCAATCCTCACATTTCGGCTTCAGGGGTCATTGGTGCTGCTGTGATGGCCTGTTTTGGGGATAATTCAGTTCGG
CCACAAGTGGTAGATGAATCTCAGCAGTTTGAAGGCTTCTGTCTTCATGCTCCTGCTGTAAAATCCACCTTATTAGTTGATACATTTTCATCTGTTTCAT
TTACTGCTCAGCACGGAAACTTCCAAAGACTATTATTAGATCTTACTCGATTTCATGCACGCCTGGATTTCCCTTCTGCTTCCAAATTTCTTTCAGGTGC
CATCAGATTAGCACAAGACTTTTGTAATTCTCAACGGCCAACCATGGAAACAGTTCAGGCAATTTGCCCCAAGGCAACCGTTTCTTTTCAGCAGCAGATA
GCAGGACCTTTCAGTTTTAGAGTTGATTCTGGAGTTGAGATTGATTGGAAGAACAAAGATTGGCATATGTGTGTGGATGATCCAGTATTTGCCATTGAGT
ATGCTTTGCATGTCCTTGGTTCAGCAAAGGCTGTTGCTTGGTATTCACCAAAGCATCGGGAATTCATGGTAGAACTTCGCTTTTTTGAAACCTAA
AA sequence
>Potri.010G002800.2 pacid=42797288 polypeptide=Potri.010G002800.2.p locus=Potri.010G002800 ID=Potri.010G002800.2.v4.1 annot-version=v4.1
MNKLRWAMDGGFWDLDRSTPRTLEGEGRAVPGEPLPLGVSRGTRLSRPKQIDFFQRFMFAPFIPSYSASSHGLSLQRVLALPFTQDWFATLLAQFNLQKF
VSSFKKNGALQSSRLENIRKHLEDKSLYALGFCSELLLSPCDTLLLSLDFYGDDNNKKPRKKAIFHHKFPNHNLNVEAVWPGLYIDKAGNYWDVPFSMAI
DLASLASDSGASYHFCMHHSAGQPMQLGGDETVEVPATLLPGISLKSAFSLKKNVEIWRSNAQKLKMVQPFDIFLSNPHISASGVIGAAVMACFGDNSVR
PQVVDESQQFEGFCLHAPAVKSTLLVDTFSSVSFTAQHGNFQRLLLDLTRFHARLDFPSASKFLSGAIRLAQDFCNSQRPTMETVQAICPKATVSFQQQI
AGPFSFRVDSGVEIDWKNKDWHMCVDDPVFAIEYALHVLGSAKAVAWYSPKHREFMVELRFFET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06960 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4,... Potri.010G002800
[exp]
0 1
AT2G41475 Embryo-specific protein 3, (AT... Potri.018G131800
[exp]
6.92 0.7067
AT3G13674 unknown protein Potri.018G082800
[exp]
10.00 0.7251
AT3G54560 HTA11 histone H2A 11 (.1) Potri.005G216600
[exp]
14.14 0.7055 HTA905
AT3G16980 NRPE9A, NRPD9A,... RNA polymerases M/15 Kd subuni... Potri.008G106900
[exp]
14.83 0.7227
AT5G64140 RPS28 ribosomal protein S28 (.1) Potri.010G245400
[exp]
19.28 0.7073 Pt-RPS28.1
AT5G47890 NADH-ubiquinone oxidoreductase... Potri.003G159100
[exp]
28.24 0.6825
AT1G71260 WHY2, ATWHY2 WHIRLY 2 (.1) Potri.003G048700
[exp]
33.04 0.6660
AT4G24440 transcription initiation facto... Potri.005G151700
[exp]
43.06 0.6398
AT1G16470 PAB1 proteasome subunit PAB1 (.1.2) Potri.012G123550
[exp]
44.66 0.6173
AT4G35987 S-adenosyl-L-methionine-depend... Potri.007G057000
[exp]
46.04 0.6193

Potri.010G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.