Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48960 904 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT1G75210 226 / 3e-65 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT2G23890 156 / 6e-41 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205900 [exp] 1101 / 0 AT5G48960 910 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.014G196700 [exp] 208 / 4e-59 AT1G75210 869 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.018G100600 [exp] 149 / 3e-38 AT2G23890 871 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032712 [exp] 219 / 3e-63 AT1G75210 900 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10019962 [exp] 161 / 2e-41 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10015485 [exp] 129 / 7e-31 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF05761 [poplar] [flax] 5_nucleotid 5' nucleotidase family
Representative CDS sequence Show only first row Show all	>Potri.010G002900.2 pacid=42799052 polypeptide=Potri.010G002900.2.p locus=Potri.010G002900 ID=Potri.010G002900.2.v4.1 annot-version=v4.1 ATGTCTGTGACGGCGGAGGTTTTGGCCAAATTCTGGTTGGCGCAGCAGAGAGACACCCGTTGTGGTGCTCCATTGTCTAATTCTCCTCTTTTTGTCAGAC CCATGTTTGCAAATACCACTAAAAGAGCTCGGATGATGGTGGTGTGCCGTTGCAGTGTTGGAGACCAAATCTTCTCTGTCACACCCTCTACTAATTACGA GTTTGATTATTTAGGACAGAGCACTAAAGGGGATTTGAATCTTAACTTTGACCATCTTGACGCTTTTGGAATGGATGGTCCGGCAACTTTACAAGGTCCA ATTGAGGAGGTTGCTATGAAGGAGGCAGAGGAAGCTGAGGATTTGCTTAATGACTTGGGCATTTCGAGTCCCTCTTCAGCAAGGAATTCATCCCGAGGTA TATTTTGCAGTCGTCCTTTAAATCTTAGGTCAATTAGTGCCATTGGATATGACATGGACTACACTTTGATACATTACAATGTGAAGGCCTGGGAAGGGCG GGCTTATGATTATTGCTTGGGAAATTTACGAAGCATGGGTTTTCCAGTTGATGGGCTTGCATTTGATCCAGACTTGGTAATTAGAGGTCTTGTTATAGAC AAAGAGAAAGGCAACCTAGTTAAAGCGGATCGATTTGGTTATGTAAAAAGGGCAATGCATGGCACCAGAATGTTGTCTACTCAAGATGTCAGTGAGATGT ATGGGAGGGAACTGGTTGATCTGCGGAAGGAGAATCGATGGGTGTTCTTAAACACACTGTTCTCTGTTTCAGAAGCTGTGGCATACATGCAGATGGTTGT TAGATATGATGAAGGAGCTATATCAGCCGAAATATGCCCACCTGACTATAGAGGACTTTACAAGGCTGTTGGAAAGGCTCTATTTCGGGCACATGTAGAG GGTCAGCTTAAGAGTGAGATAATGTCAAAACCTGAATTGTTTGTGGAGCCTGACCCAGAATTACCTTTAGCACTGTTAGATCAAAAGGAGGCTGGTAAAA AGCTTCTACTCATTACAAACTCTGATTATCATTACACGGACAAAATGATGAAGCATTCATTTAACAGATTCCTACCAAATGACATGGGCTGGCGAGATCT GTTTGACATAGTGATAATATCTGCCAGAAAGCCAGAATTCTTTCAAATGTCTCACCCGTTGTATGAGGTGGTGACTGGCGAGGGTTTAATGCGCCCATGC TTCAAAGCTTGTAAAGGTGGATTGTACTCAGGTGGGAGTGCTCAGATGGTGGAAAACTCCTTAGATATCCACGGGGACGAAATATTATATGTAGGTGATC ATATTTACACTGATGTGAGTCAATCAAAAGTCCACCAACTATGGCGAACAGCATTGATTTGTCAAGAGCTGGAAGAAGAGCATAGTGCTCTGATTCATAG TAGGGGTCATCGGGCCACACTGATTGAGCTAATTAATCAAAAGGAGGTGGTAGGGGATCTCTTTAATCAACTTCGGCTAGCTCTGCAAAGGCGAAATACA GGACGTCCTGCTCAAACCCTTGCTGCAACTAACATGGATGATCAAGAACTCACAGAAAGCATGAAAAAGCTATTAATTGTTATGCAAAGACTGGATGAGA AAATTGCTCCAATGCTAGAAGCAGATGGAGAGCTTTTCAATAAAAGGTGGGGATTTCTTTCACGTGCAGGTCTGTGGGATAAAAGCCACTTAATGAGACA AATTGAGAAGTATGCTGATATATATACCTCCAGGGTCTCAAATTTCCTCCACTACACCCCTTTCATGTACTTCCGTTCACAAGAACAGACGTTAGCTCAT GATTCGCATTCATACTACCAGACACAGATTAATGGGTCTGCCGTTGACAACCAGTGCTAA
AA sequence Show only first row Show all	>Potri.010G002900.2 pacid=42799052 polypeptide=Potri.010G002900.2.p locus=Potri.010G002900 ID=Potri.010G002900.2.v4.1 annot-version=v4.1 MSVTAEVLAKFWLAQQRDTRCGAPLSNSPLFVRPMFANTTKRARMMVVCRCSVGDQIFSVTPSTNYEFDYLGQSTKGDLNLNFDHLDAFGMDGPATLQGP IEEVAMKEAEEAEDLLNDLGISSPSSARNSSRGIFCSRPLNLRSISAIGYDMDYTLIHYNVKAWEGRAYDYCLGNLRSMGFPVDGLAFDPDLVIRGLVID KEKGNLVKADRFGYVKRAMHGTRMLSTQDVSEMYGRELVDLRKENRWVFLNTLFSVSEAVAYMQMVVRYDEGAISAEICPPDYRGLYKAVGKALFRAHVE GQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMKHSFNRFLPNDMGWRDLFDIVIISARKPEFFQMSHPLYEVVTGEGLMRPC FKACKGGLYSGGSAQMVENSLDIHGDEILYVGDHIYTDVSQSKVHQLWRTALICQELEEEHSALIHSRGHRATLIELINQKEVVGDLFNQLRLALQRRNT GRPAQTLAATNMDDQELTESMKKLLIVMQRLDEKIAPMLEADGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAH DSHSYYQTQINGSAVDNQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	3.74	0.8332
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	3.87	0.8090
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	6.08	0.8644
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.006G254900 [exp]	6.32	0.7745
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	8.60	0.7768
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.016G142500 [exp]	11.83	0.8091
AT1G70940		PIN3, ATPIN3	ARABIDOPSIS PIN-FORMED 3, Auxi...		Potri.008G129400 [exp]	13.41	0.8005	PIN3.2,PIN6
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081433 [exp]	16.55	0.7244
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	18.13	0.8189
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.011G044300 [exp]	19.49	0.8230	GAL1.6

Compare expression of checked genes

Potri.010G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.