Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48280 356 / 1e-116 hydroxyproline-rich glycoprotein family protein (.1) AT3G25690 288 / 1e-87 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 256 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07120 221 / 8e-67 unknown protein AT4G04980 61 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130800 [exp] 294 / 1e-88 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 280 / 2e-86 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G460300 [exp] 281 / 2e-85 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 278 / 2e-84 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 268 / 6e-82 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G279000 [exp] 243 / 2e-74 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 243 / 2e-74 AT1G07120 434 / 4e-151 unknown protein Potri.004G038400 [exp] 57 / 3e-08 AT4G04980 387 / 4e-121 unknown protein Potri.001G317001 [exp] 47 / 3e-05 AT4G04980 320 / 5e-98 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000986 [exp] 273 / 2e-84 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 281 / 1e-83 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 280 / 1e-83 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10025419 [exp] 266 / 5e-81 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 264 / 3e-80 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031863 [exp] 219 / 9e-66 AT1G07120 393 / 2e-135 unknown protein Lus10013931 [exp] 217 / 2e-63 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031293 [exp] 139 / 1e-36 AT1G07120 267 / 3e-87 unknown protein Lus10033704 [exp] 74 / 2e-13 AT4G04980 311 / 4e-94 unknown protein Lus10031636 [exp] 62 / 6e-10 AT4G04980 313 / 3e-95 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G003100.4 pacid=42798267 polypeptide=Potri.010G003100.4.p locus=Potri.010G003100 ID=Potri.010G003100.4.v4.1 annot-version=v4.1 ATGTCACAACATTCCACAACCCCATCTCGACACAGAGTCAATTTTAAGACGCCAAAACCAGCCGAGGTTGCTAATAATGGGTCACCAGTACCATCACCAG CCAACAAAACAAGAGCAAAATCCGTGCCTCCAGATGTGAAGAAAGACACCAAGGTAAGGAAGTCGCTGGTGGGGAACAACAAGCCAAAATCTGGAGAGCT GGTTGTGGGATCTCAGGATGTAACAGTGGTGGGTCGCTCCGTGAACCGACCAGGTAGCGAGCAATTTGCTAGGCCAAGGAGGCAAAGGCCTGTGTTGGAT CCTATTAATGCTAGTAGAAGAAATGAAGAAGAGAGCTATAAAAAGGGGTTGCACGAGAAACTTGAATTGTCTGAGACTTTGATTAACGATTTGCAGTCTG AGGTTTTGGCTTTGAAGGTAGAATTGGATAAAGCGAATGGCTTGAACCAAGAGCTCGAGTTGCAGAACAAGAAGCTCACTGAGGATCTTGCTGCTGCTGA AGCTAAGGTTTCAGCTCTTAACACTCGTCACCAGTCGAAGGAGTCTGTTGGAGAGCACCAGAGGCCAAGATTTAAGGACATTCAGAAACTTATTGCCATC AAATTGGAAAACTCACCAGTTAAGAAGGAAGCAATCAATGGACCAAGTAAAGTTAAAACCCCACAGTCACCACCACCACCACCAGTACCACGTTTCATAT CCAAAGCTGATGTTGCAGAAAGGAAGGCTCCAACTTGTCCATCCTTGATGCCACCTCCACCTCCACCACCCCTACCCCCAATGCGGCCTCTAGCAAGAGC AACTACTGCTCCTAAAACTCCAGCAATTGTAGAATTCTATAATTCAATAAGAAAGCAAGAGGGTAAGAGAGATTCTCCAGGACTGCGGAGTCAGTATAAA CCAGAGAAAACTAGTGCACACAGCAGCATAGTTGGAGAGATCCAAAATCGCTCCACACATCTGTTAGCTATAAAAGCGGACATTGAAACAAAGGGTGATT TCATCAATGGTCTTATTCAGAAAGTGCTAGCTGCAGCTTATACAGATATTGAGGATGTCTTAAAATTCGTGGATTGGCTTGACGGTGAACTCTCATCTTT GGCTGATGAACGAGCTGTGTTAAAGCATTTCAAGTGGCCGGAGAAGAAAGCAGATGCAATCAGAGAAGCGGCTATAGAATATCGTGGCCTTAAACTATTA GAAAGTGAGATATCTTCCTTTAAGGATGAATCTAATAATCCATGTGGAACTGCCTTGAAAAAGATGGCTGTCTTACATGACAAGTCAGAGCGAAGCATTC AAAAGCTGATTAAACTTAGAAACTCCGTTATGAACTCTTACCAGGCTTGGAAGATTCCAACTGATTGGATGCTTGATTCGGGAATTGTAAGCAAGATAAA GCAGGCTTCTATGAGGCTGGCAAAGATGTACATGAAGAGAGTGATAACAGAACTTGAATTGGCCCGTAATTCTGAGAGAGAATGCAATCAAGAAGCTCTC CTGCTTCAAGGTTTGCATTTTGCATATAGGGCTCACCAGTTTGCTGGATGTCTTGATTCAGAAACAATGTGTGCTTTTGAAGAGATAAGACAGCGGGTTC CGGGACACCTAGGAGGATCTCGAGAATTACTAGCTGCCATACCATCATCATGA
AA sequence Show only first row Show all	>Potri.010G003100.4 pacid=42798267 polypeptide=Potri.010G003100.4.p locus=Potri.010G003100 ID=Potri.010G003100.4.v4.1 annot-version=v4.1 MSQHSTTPSRHRVNFKTPKPAEVANNGSPVPSPANKTRAKSVPPDVKKDTKVRKSLVGNNKPKSGELVVGSQDVTVVGRSVNRPGSEQFARPRRQRPVLD PINASRRNEEESYKKGLHEKLELSETLINDLQSEVLALKVELDKANGLNQELELQNKKLTEDLAAAEAKVSALNTRHQSKESVGEHQRPRFKDIQKLIAI KLENSPVKKEAINGPSKVKTPQSPPPPPVPRFISKADVAERKAPTCPSLMPPPPPPPLPPMRPLARATTAPKTPAIVEFYNSIRKQEGKRDSPGLRSQYK PEKTSAHSSIVGEIQNRSTHLLAIKADIETKGDFINGLIQKVLAAAYTDIEDVLKFVDWLDGELSSLADERAVLKHFKWPEKKADAIREAAIEYRGLKLL ESEISSFKDESNNPCGTALKKMAVLHDKSERSIQKLIKLRNSVMNSYQAWKIPTDWMLDSGIVSKIKQASMRLAKMYMKRVITELELARNSERECNQEAL LLQGLHFAYRAHQFAGCLDSETMCAFEEIRQRVPGHLGGSRELLAAIPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48280			hydroxyproline-rich glycoprote...		Potri.010G003100 [exp]	0	1
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	35.35	0.6766
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	37.81	0.6928
AT5G56040			Leucine-rich receptor-like pro...		Potri.012G088100 [exp]	53.16	0.6918
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133300 [exp]	67.34	0.6783	PCBERp4
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	72.57	0.6811	MOR2,Pt-MOR1.2
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.011G169300 [exp]	102.26	0.6199	WRKY2.1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.004G208600 [exp]	109.68	0.5922
AT5G59790			Domain of unknown function (DU...		Potri.009G027500 [exp]	116.25	0.6479
AT1G16520			unknown protein		Potri.007G066900 [exp]	166.26	0.6320
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.006G152700 [exp]	178.06	0.6233

Compare expression of checked genes

Potri.010G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.