Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48310 932 / 0 CHR18, CHA18 chromatin remodeling factor18 (.1) AT5G07810 277 / 4e-80 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) AT2G25170 157 / 9e-40 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G13370 146 / 7e-36 CHR5 chromatin remodeling 5 (.1) AT2G02090 144 / 1e-35 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G54280 139 / 9e-34 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT3G06010 137 / 2e-33 ATCHR12 Homeotic gene regulator (.1) AT5G19310 137 / 2e-33 Homeotic gene regulator (.1) AT4G31900 137 / 4e-33 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G18760 135 / 1e-32 CHR8 chromatin remodeling 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067000 [exp] 286 / 2e-83 AT5G07810 1185 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Potri.010G099000 [exp] 157 / 3e-40 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.006G262200 [exp] 158 / 7e-40 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 149 / 5e-37 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.013G068400 [exp] 149 / 7e-37 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Potri.009G047800 [exp] 145 / 9e-36 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.001G253400 [exp] 141 / 2e-34 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.007G026700 [exp] 133 / 3e-32 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 130 / 3e-31 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006642 [exp] 868 / 0 AT1G48310 834 / 0.0 chromatin remodeling factor18 (.1) Lus10039409 [exp] 848 / 0 AT1G48310 778 / 0.0 chromatin remodeling factor18 (.1) Lus10003469 [exp] 283 / 4e-82 AT5G07810 1276 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Lus10005339 [exp] 156 / 3e-39 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 154 / 1e-38 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10039140 [exp] 150 / 9e-38 AT2G02090 1107 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10013625 [exp] 149 / 8e-37 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10022423 [exp] 141 / 2e-34 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10033909 [exp] 140 / 3e-34 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10009711 [exp] 140 / 4e-34 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G003300.1 pacid=42798154 polypeptide=Potri.010G003300.1.p locus=Potri.010G003300 ID=Potri.010G003300.1.v4.1 annot-version=v4.1 ATGGAATTGGATGACGACGACTGGGGTTTAAGCGCTGAAGAATTTGATTCCCTTGAAAGAGACGCTCTCCTGAAGATAGCATCTCAACAACAACAACAGC AACAACAGCAACAGCAACAGCAACCTTCTGCTTCTTCTTCTTTTAATCAACAACAAAACCAGCAATTACATTTTAGCAACAAACCCATCTTTAATTCTCC TTCAAAAAAGGTTGATCCTTTGCCTGATGGCTTGCCCAAATCATCGCCGGTATCAAAACCAAAACCTGTTGAAAGTTCCAAGGCATTACCAAAGCTCTCT GTCAAGTTTATTCTTCATGCTACTGGAAACATTGCCGCTAAATTTTTATACGACCCTGTACTAGTAGGGGCTCTCCGCAAGGTCCCCAAAGCCAATTGGA ATGCAAAAGAAAGGTTGTGGATTTTCCCAGTATCTTCTTTGTTGTCAGCAGAAAAAGTTCTTAGTGAAATATCTGGCTTTAATGTTGAGGTAGAAAAGTT AGACACCTTGGTGCAACGTGCTATTGCTGCTGCTTCTGTTGCTCCAGATCTTCGAGACTGGTATGACAGGATACCAGACCATATTGAATCAAAGCTTATG CCTTTTCAGCGGGATGGTGTTAGGTTTGTTTTACAACATGGTGGGCGCGCACTCCTAGCAGATGAAATGGGACTGGGAAAGACTTTACAGGCTATTGCTG TAGCAGCATGTGTTCGTAATTCCTGGCCTGTTCTAATACTTGCACCCTCTTCCTTGCGTTTGCATTGGGCTTCAACGATTCACCAATGGCTTGATATTCC TTCATCAGATATACTTGTTGTTTTATCGCAATCGAGTGGATCTAACAGAGCTGGATTCAATATTGTATCAAGTTCTAGGAGCACTATTCGCCTTGATGGC TTATTTAACATCATCTCTTATGATGCAGTCCCTAAGTTGCAGAACAAATTAATGACATCAGAGTTTAAGGTTGTGATTGCAGACGAGTCACACTTCCTGA AAAATGCTCAAGCAAAGAGGACAACTGCCTCGCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTCAGTGGAACCCCTGCTTTATCCAGACCCAT AGAGCTTTTTAAGCAGTTGGAAGCCTTGTATCCTGATGTATACAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGGGGAATATTTGGAGTTTAT CAAGGTGCAAGTAACCATGAAGAATTGCACAACTTAATCAAGGCAACAGTGATGATACGCAGGCTTAAAAAGGATGTCCTTTCTGAGCTTCCTGTGAAAC GACGACAACAGGTATTCCTTGATTTGCCTGAAAAGGACATGAAACAAATCAATACTTTATTCCGTGAGTTGGAGGTGGTAAAAGGAAAAATTAAGGCTTG TGCATCAGATGAAGAGGTTGAATCACTGAAATTCACAGAGAAGAATCTTATTAACAAGATATATACTGATTCTGCTGAAGCCAAGATATCTGGAGTTCTA GATTATCTGGGAACTGTCATTGAGGCAGGATGCAAGTTTCTGATTTTTGCTCACCATCAATCCATGATTGATTCAATACATGAGTTTCTTCTTAAAAAAA AAGTGGGCTGCATCCGAATTGATGGCAAAACCGCTGCAGCTTCAAGGCAAGCATTGGTAACTGATTTTCAGGAAAAGGATGCTATCAAGGCAGCAGTGCT ATCTATTAGAGCTGGAGGTGTTGGGTTAACTTTAACAGCTGCAAGCACTGTTATTTTTGCGGAATTGTCTTGGACACCAGGTGACCTAATTCAAGCGGAA GACCGTGCTCACAGGATTGGTCAGGTTTCTTCAGTCAATATATACTACCTGCTAGCAAATGACACAGTTGATGACATCATTTGGGATGTTGTTCAAAGCA AATTGGAAAATTTGGGACAGATGCTCGATGGGCAAGAGAAAACCTTGGAAGTTTCAGCCAGCCAGCAGAGAAGCAGCCCTGCGAAGCAGAGAACACTAGA CACTTACATGAAGCGATGTAGCAATTTGGATGACTCTGAACATCAGCCTAAGCTCAAATACCCCAGGCACTGA
AA sequence Show only first row Show all	>Potri.010G003300.1 pacid=42798154 polypeptide=Potri.010G003300.1.p locus=Potri.010G003300 ID=Potri.010G003300.1.v4.1 annot-version=v4.1 MELDDDDWGLSAEEFDSLERDALLKIASQQQQQQQQQQQQQPSASSSFNQQQNQQLHFSNKPIFNSPSKKVDPLPDGLPKSSPVSKPKPVESSKALPKLS VKFILHATGNIAAKFLYDPVLVGALRKVPKANWNAKERLWIFPVSSLLSAEKVLSEISGFNVEVEKLDTLVQRAIAAASVAPDLRDWYDRIPDHIESKLM PFQRDGVRFVLQHGGRALLADEMGLGKTLQAIAVAACVRNSWPVLILAPSSLRLHWASTIHQWLDIPSSDILVVLSQSSGSNRAGFNIVSSSRSTIRLDG LFNIISYDAVPKLQNKLMTSEFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGVY QGASNHEELHNLIKATVMIRRLKKDVLSELPVKRRQQVFLDLPEKDMKQINTLFRELEVVKGKIKACASDEEVESLKFTEKNLINKIYTDSAEAKISGVL DYLGTVIEAGCKFLIFAHHQSMIDSIHEFLLKKKVGCIRIDGKTAAASRQALVTDFQEKDAIKAAVLSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAE DRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGQEKTLEVSASQQRSSPAKQRTLDTYMKRCSNLDDSEHQPKLKYPRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Potri.010G003300 [exp]	0	1
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	4.12	0.7990
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	5.47	0.8740
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	6.32	0.8657
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.001G467000 [exp]	10.19	0.8021
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	10.81	0.8150	MOR2,Pt-MOR1.2
					Potri.004G011300 [exp]	11.83	0.8288
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.014G070900 [exp]	14.66	0.7808
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	16.61	0.8562
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	18.97	0.8335
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	22.84	0.7574

Compare expression of checked genes

Potri.010G003300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.