Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SOYAP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62290 548 / 0 Saposin-like aspartyl protease family protein (.1.2) AT1G11910 543 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT4G04460 521 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 184 / 1e-53 Eukaryotic aspartyl protease family protein (.1) AT1G69100 156 / 5e-43 Eukaryotic aspartyl protease family protein (.1) AT5G43100 53 / 3e-07 Eukaryotic aspartyl protease family protein (.1) AT3G50050 51 / 2e-06 Eukaryotic aspartyl protease family protein (.1) AT3G54400 49 / 5e-06 Eukaryotic aspartyl protease family protein (.1) AT3G51360 46 / 5e-05 Eukaryotic aspartyl protease family protein (.1) AT3G12700 42 / 0.0006 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G002200 [exp] 595 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.001G356900 [exp] 571 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 550 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 545 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 525 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 446 / 8e-153 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.002G092100 [exp] 56 / 3e-08 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 50 / 3e-06 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 50 / 4e-06 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 545 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 545 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 523 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 512 / 2e-178 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 508 / 1e-177 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 481 / 5e-167 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 442 / 2e-152 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 427 / 4e-146 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10024792 [exp] 54 / 3e-07 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018709 [exp] 52 / 6e-07 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease CL0129 [poplar] [flax] PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 CL0129 [poplar] [flax] PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.010G003400.4 pacid=42798019 polypeptide=Potri.010G003400.4.p locus=Potri.010G003400 ID=Potri.010G003400.4.v4.1 annot-version=v4.1 ATGGAGTCGATCAGATTTCTTCTAATTTCAATCTGCATGGGAGCTTGGTTGGGTGGTTCCTTGTCTTCTGATGGGTTAGCGAGAGTTGGTCTAAAGAAAA GGAATTTAGACCTTAACAGCATACATGCAGCCAGGATCACCAGACCTCAGGCTACTTCCTTTGCCAGAGTAACTTCAAATGCAGAAATAGTATACTTAAA GAATTATCTTGATACTCAATATTATGGAGAGATTGGCATTGGATCACCCCCACAAATTTTCACTGTTGTGTTTGATACTGGCAGCTCCAATCTTTGGGTT CCATCTTCAAAATGCCTTTTATCAATTACTTGCTATTTCCATTCCAAATTCATTGCAAGGCTATCCAGAACTTATACTAAGATCGGTATACCATGCAAAA TTCAATATGGTTCTGGGTCTGTTTCTGGGTTCTTAAGCCAAGATCATGTCAAAGTTGGGGATGATATCATTATAAATCAAGAGTTTGCTGAGGTAACAAG AGAAGGGTTTTTAGCACTCTTGGGTGTGCAGTTTGATGGCATCCTTGGACTTGCATTTCAGGATATTGCCGTTGCAAAAGCTACACCAGTATGGTATAAT ATGGCTGAACAAGGTCATGTAAGCCAGAAAGTTTTCTCTCTCTGGCTAAATCGCAATCCATCGTCAGAATTGGGAGGGGAAGTTGTCTTTGGAGGTCTAG ATTGGAGGCACTTCAAAGGTGACCATACATATGTCCCAGTCACTGGAAGAGGTTACTGGCAGATTCAGGTGGGGGATATTTTTATTGCAAACAATTCAAC AGGATTGTGTGCTGGTGGCTGTTCTGCCATTGTGGACTCAGGGACATCATTTCTTTCCGGTCCAACTCGTATAGTGGCACAAATTAACCATGCCATTGGA GCTAGAGGAATTGTGAGTTTGGAATGTAAAGAAGTTGTGTCCAAGTACTGGAATTCAATATGGGATTCGATGATATCTGGATTAAGGCCTGAAATTATAT GCGTTGATGTTGGACTGTGTCTATACAACAACAACACTGTTATTGAGACTGTGGTCGATGGTGAAGCTACAGATAGATTATCAGTGGATGAGGGTGGTGC TTTATGTACTTTCTGCGAGATGATTGTTTTCTGGATTCAAGTACAACTTAAAGAGAAAAAAGCAAAGGAAAAGATATTTCATTATGTTGATGAGCTGTGC GAGAGGCTCCCCAATCCTCTAGGAAAATCATTTATCAACTGCGATGAAATCACAGCCATGCCATATGTTTCCTTCACCATAGGAAACAGATCCTTTCCTC TGTCTCCAGAGCAGTATATTGTTAGAGTTGAAGAAAGCTATGCTACTATTTGCTTGAGTGGATTTGCAGCTTTAGATATGCCTCCTCGACAAGGTCCCCT CTGGATTCTTGGAGATGTGTTTTTGGGAGCATACCACACGGTGTTTGATTTTGGTAATCACCGGATAGGATTTGCTAAAGCTGCCTAG
AA sequence Show only first row Show all	>Potri.010G003400.4 pacid=42798019 polypeptide=Potri.010G003400.4.p locus=Potri.010G003400 ID=Potri.010G003400.4.v4.1 annot-version=v4.1 MESIRFLLISICMGAWLGGSLSSDGLARVGLKKRNLDLNSIHAARITRPQATSFARVTSNAEIVYLKNYLDTQYYGEIGIGSPPQIFTVVFDTGSSNLWV PSSKCLLSITCYFHSKFIARLSRTYTKIGIPCKIQYGSGSVSGFLSQDHVKVGDDIIINQEFAEVTREGFLALLGVQFDGILGLAFQDIAVAKATPVWYN MAEQGHVSQKVFSLWLNRNPSSELGGEVVFGGLDWRHFKGDHTYVPVTGRGYWQIQVGDIFIANNSTGLCAGGCSAIVDSGTSFLSGPTRIVAQINHAIG ARGIVSLECKEVVSKYWNSIWDSMISGLRPEIICVDVGLCLYNNNTVIETVVDGEATDRLSVDEGGALCTFCEMIVFWIQVQLKEKKAKEKIFHYVDELC ERLPNPLGKSFINCDEITAMPYVSFTIGNRSFPLSPEQYIVRVEESYATICLSGFAALDMPPRQGPLWILGDVFLGAYHTVFDFGNHRIGFAKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62290			Saposin-like aspartyl protease...		Potri.010G003400 [exp]	0	1	SOYAP2.1
AT5G42690			Protein of unknown function, D...		Potri.014G034800 [exp]	8.06	0.7598
					Potri.013G151333 [exp]	14.56	0.7443
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G014200 [exp]	21.63	0.7397	Pt-FLA14.16
AT5G56040			Leucine-rich receptor-like pro...		Potri.015G080800 [exp]	21.63	0.7354
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Potri.014G094100 [exp]	25.49	0.6748
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151500 [exp]	30.65	0.7295	Pt-FLA14.15
AT3G51150			ATP binding microtubule motor ...		Potri.005G116900 [exp]	38.05	0.7127
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	38.10	0.7196	Pt-ATEB1.3
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	39.33	0.7151
AT1G77610			EamA-like transporter family p...		Potri.005G177200 [exp]	40.69	0.7117

Compare expression of checked genes

Potri.010G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.