Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09995 49 / 3e-07 unknown protein AT1G08530 49 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052700 [exp] 49 / 3e-07 AT1G08530 277 / 1e-93 unknown protein Potri.007G081800 [exp] 48 / 8e-07 AT5G09995 246 / 5e-82 unknown protein Potri.019G030400 [exp] 47 / 1e-06 AT1G08530 266 / 1e-89 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042523 [exp] 47 / 2e-06 AT1G08530 263 / 2e-88 unknown protein Lus10016816 [exp] 47 / 2e-06 AT5G09995 216 / 4e-70 unknown protein Lus10021985 [exp] 47 / 3e-06 AT1G08530 256 / 3e-85 unknown protein Lus10035858 [exp] 45 / 7e-06 AT5G09995 214 / 1e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G003700.5 pacid=42799910 polypeptide=Potri.010G003700.5.p locus=Potri.010G003700 ID=Potri.010G003700.5.v4.1 annot-version=v4.1 ATGCATCTCCTTCTTCTTCTTGGACCGACCCCATTGTGTCTGTACCCTTCCATGTCTGTGGGGAGACTCAGACCTTGTTCTTGTTGTTCTGTTCCTCCTT ACACATCGATGCTCGGCAGGACAAGAGGGACAACACCAGGTACTGCAGCTCTTCTCATAAATCGAGTTTCCAGTAACGTTGCTGATGCTCCGCAATCCAA GCTCCTCTCTTCTACTCGATTGCCTTTCACTCCTAGCCATCTCAAATCTCTAGGGTTCAAGCCCTCCCCTCCTCAGTTGGCCCTCCTCTCTCTCTTGTTT CTTCTTTCTATGGCTATTGGAGCAATTTTCTCTTTGGCTGTCATTTGCCTTCCAACCATAGCTGCTTTTAGAAGATTGGGAGCTTCTGTCCACAAATTGT CCCAAGTCGTCTCTGAAGAGGTGCCAGGAACCTTGTCTTCTCTCAAGCTCTCTGCCCATGAGATTAATGAACTCGCTCGACAACTTACCAATCTCAGGCA AAAGATCTCTGCAACTGATCAGCATGGAAAGTGGAAACAAAGCCAAAATCAATAA
AA sequence Show only first row Show all	>Potri.010G003700.5 pacid=42799910 polypeptide=Potri.010G003700.5.p locus=Potri.010G003700 ID=Potri.010G003700.5.v4.1 annot-version=v4.1 MHLLLLLGPTPLCLYPSMSVGRLRPCSCCSVPPYTSMLGRTRGTTPGTAALLINRVSSNVADAPQSKLLSSTRLPFTPSHLKSLGFKPSPPQLALLSLLF LLSMAIGAIFSLAVICLPTIAAFRRLGASVHKLSQVVSEEVPGTLSSLKLSAHEINELARQLTNLRQKISATDQHGKWKQSQNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09995			unknown protein		Potri.010G003700 [exp]	0	1
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	1.00	0.9841	NHD1.2
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.001G287400 [exp]	2.44	0.9803	MDHG.2
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.016G103600 [exp]	2.44	0.9759
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	3.46	0.9778
AT3G17670			tetratricopeptide repeat (TPR)...		Potri.015G029700 [exp]	6.92	0.9635
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	7.00	0.9733	APG2.1
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	7.14	0.9785
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	9.48	0.9776	SK1
AT5G11840			Protein of unknown function (D...		Potri.006G229600 [exp]	11.87	0.9587
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	12.00	0.9718	CP33.2

Compare expression of checked genes

Potri.010G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.