Plant FIBer expression Database

Potri.010G003800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48320 170 / 9e-55 Thioesterase superfamily protein (.1)
AT5G48950 144 / 2e-44 Thioesterase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G003600
[exp]
211 / 8e-71 AT1G48320 197 / 1e-65 Thioesterase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006220
[exp]
187 / 3e-61 AT1G48320 218 / 5e-74 Thioesterase superfamily protein (.1)
Lus10011142
[exp]
149 / 2e-46 AT1G48320 203 / 4e-68 Thioesterase superfamily protein (.1)
Lus10043043
[exp]
120 / 6e-35 AT1G48320 151 / 4e-47 Thioesterase superfamily protein (.1)
Lus10036869
[exp]
95 / 7e-26 AT1G48320 124 / 1e-37 Thioesterase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0050 HotDog PF03061 4HBT Thioesterase superfamily
Representative CDS sequence
>Potri.010G003800.2 pacid=42798675 polypeptide=Potri.010G003800.2.p locus=Potri.010G003800 ID=Potri.010G003800.2.v4.1 annot-version=v4.1
ATGGAGCAATCATCATCTTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCAAAAAAGAAAGTCTTGACGTTCCCCTGCATTCCTTTGGGTTCCAAA
TTGAAGAATTGTCCCCTCAAAAGGTCACTGGTCGCCTGCTTGTTACTCCCAAGTGCGTTCAGCCGTTCAAGGTATTACACGGCGGAGTATCGGCGTTGAT
TTCGGAAGCGATGGCTAGCATGGGGGCCCACATGGCATCGGGATTGCAAAGAGTGGCTGGGATTCACCTGAGCATCAATCATGTGAAAAGCGCCCGCCTT
GGAGACCTTGTCCTCGCCGAAGCCACTCCCTTCAGTATAGGCAAAACCATTCAGGTGTGGGAGGTGCGAATCTGGAAATTAGCGGATCCTTCAAACACAG
AGTCCTCCAAATCATTGGTATCATCGTCAAGGGTTACTCTCATGTGCAACTTGCCTGTGCCTGACCATGCTAAAGAAGCCACTGAAAATCTCAGAAGCCA
TGCTAAATTATGA
AA sequence
>Potri.010G003800.2 pacid=42798675 polypeptide=Potri.010G003800.2.p locus=Potri.010G003800 ID=Potri.010G003800.2.v4.1 annot-version=v4.1
MEQSSSSSSSSSSSSSSSKKESLDVPLHSFGFQIEELSPQKVTGRLLVTPKCVQPFKVLHGGVSALISEAMASMGAHMASGLQRVAGIHLSINHVKSARL
GDLVLAEATPFSIGKTIQVWEVRIWKLADPSNTESSKSLVSSSRVTLMCNLPVPDHAKEATENLRSHAKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48320 Thioesterase superfamily prote... Potri.010G003800
[exp]
0 1
AT1G77230 Tetratricopeptide repeat (TPR)... Potri.002G076700
[exp]
6.48 0.7277
AT3G10250 Plant protein 1589 of unknown ... Potri.016G038100
[exp]
9.32 0.7302
AT1G02680 TAF13 TBP-associated factor 13 (.1) Potri.014G122500
[exp]
16.27 0.7014
AT2G39170 unknown protein Potri.008G035000
[exp]
19.74 0.6798
AT5G05800 unknown protein Potri.015G137800
[exp]
22.64 0.7197
AT1G19250 FMO1 flavin-dependent monooxygenase... Potri.006G060200
[exp]
23.95 0.6817
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Potri.003G224000
[exp]
24.37 0.7010
AT2G37050 Leucine-rich repeat protein ki... Potri.006G132100
[exp]
33.70 0.6792
AT3G14205 Phosphoinositide phosphatase f... Potri.001G163900
[exp]
37.82 0.6937
AT2G05830 NagB/RpiA/CoA transferase-like... Potri.006G219900
[exp]
38.83 0.6437

Potri.010G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.