Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48330 86 / 5e-24 unknown protein AT3G17580 80 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G187500 [exp] 45 / 6e-08 AT5G43150 51 / 8e-10 unknown protein Potri.001G037400 [exp] 45 / 2e-07 AT5G43150 56 / 1e-11 unknown protein Potri.010G088200 [exp] 37 / 5e-05 AT5G43150 40 / 8e-06 unknown protein Potri.008G152200 [exp] 38 / 0.0001 AT5G43150 41 / 9e-06 unknown protein Potri.013G037800 [exp] 35 / 0.0006 AT5G43150 39 / 2e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041628 [exp] 49 / 3e-09 AT5G43150 52 / 3e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G004000.1 pacid=42797967 polypeptide=Potri.010G004000.1.p locus=Potri.010G004000 ID=Potri.010G004000.1.v4.1 annot-version=v4.1 ATGGCTTCTTGGAAAAAAACCATTACATCCCCTTTCAGGAAAGCTTGTACTTTCTTCAACCAGCAGCAAGCCGTCAGCAGGGACAAGAAGTCCCAGCCAG GGGAGGAGAAAAGGGTGCTGGACCTTCATGGTGAAGTCATGGCATGTGGTTATGAAGATGTTCAAGTGATGTGGTCGATTCTTGACAAGTCCAAATCCGC CACCTGCGACATGACCACTTCTTGA
AA sequence Show only first row Show all	>Potri.010G004000.1 pacid=42797967 polypeptide=Potri.010G004000.1.p locus=Potri.010G004000 ID=Potri.010G004000.1.v4.1 annot-version=v4.1 MASWKKTITSPFRKACTFFNQQQAVSRDKKSQPGEEKRVLDLHGEVMACGYEDVQVMWSILDKSKSATCDMTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48330			unknown protein		Potri.010G004000 [exp]	0	1
					Potri.014G158501 [exp]	2.64	0.9567
AT5G06280			unknown protein		Potri.016G072500 [exp]	3.46	0.9308
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.014G117700 [exp]	12.12	0.9310
AT3G57990			unknown protein		Potri.001G145400 [exp]	24.08	0.9273
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G025100 [exp]	29.34	0.9265
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	34.85	0.9238
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.014G031100 [exp]	35.49	0.9118
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Potri.009G066000 [exp]	37.10	0.9150
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.006G216200 [exp]	39.24	0.9219
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	44.42	0.9172

Compare expression of checked genes

Potri.010G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.