Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BSH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17590 386 / 1e-137 CHE1, BSH BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013697 [exp] 377 / 5e-134 AT3G17590 387 / 3e-138 BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2) Lus10005562 [exp] 252 / 1e-85 AT3G17590 251 / 3e-85 BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04855 [poplar] [flax] SNF5 SNF5 / SMARCB1 / INI1
Representative CDS sequence Show only first row Show all	>Potri.010G004100.1 pacid=42796818 polypeptide=Potri.010G004100.1.p locus=Potri.010G004100 ID=Potri.010G004100.1.v4.1 annot-version=v4.1 ATGAAAGCGCTGCCTTCATCGTCTTCAAAAGGGCCTGTCAAGTTCAGGGTGCCAACAAGGGAGAACTTGGTGCCAATTCGTCTGGACATAGAATTAGAGG AGCAGCGTTACAAAGATGCCTTCACATGGAATCCCACGGATCCAGACTCTGAGATTACCATCTTCGCTAAAAGAACTGTCAAAGACTTGAAGCTTCCTCC TCCTTTTATTATGCACATTGTTCAATCCATACAGACGCAATTGGCCGAGTTTCGATCCTATGAAGGTCAAGATATGCTGTACACTGGAGACAAGATTGTG CCTATTAAGCTTGATCTTCGCGTGAATAACACTCTTATAAAGGATCAGTTTTTGTGGGACATGAACAACTTTGAAAGTGATCCCGAAGACTTTGCTAAAA CCTTTTGCGACGATTTGGGTATTCAAGACCCTGAAGTTGGACCTGCAGTTGCCTTTGCTATTAGGGAACAGCTTTATGAGACTGCAGTTCAAAGTGTAGC TGCTGCAAGAGAAATCAGAATGAGTAAAAAGGGACGTCGTGGTGCCGAATATGTTCCTGCAAGTAAAGCAGGTGGTACTTCATTGGATTTGATGAAGTTG TTCAACAACAAATACAGTGTGGTTCGGAAAAGAAAGGATTGGGATGTGTATGGGCCTATGGTTGATCTCTTATCAAATGAGGAAGTAGATGCCCTTGAAG CGCGGGAAGAGAGGAATGCTCGATCTATGATTTGA
AA sequence Show only first row Show all	>Potri.010G004100.1 pacid=42796818 polypeptide=Potri.010G004100.1.p locus=Potri.010G004100 ID=Potri.010G004100.1.v4.1 annot-version=v4.1 MKALPSSSSKGPVKFRVPTRENLVPIRLDIELEEQRYKDAFTWNPTDPDSEITIFAKRTVKDLKLPPPFIMHIVQSIQTQLAEFRSYEGQDMLYTGDKIV PIKLDLRVNNTLIKDQFLWDMNNFESDPEDFAKTFCDDLGIQDPEVGPAVAFAIREQLYETAVQSVAAAREIRMSKKGRRGAEYVPASKAGGTSLDLMKL FNNKYSVVRKRKDWDVYGPMVDLLSNEEVDALEAREERNARSMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Potri.010G004100 [exp]	0	1	Pt-BSH.1
AT3G30841			Cofactor-independent phosphogl...		Potri.004G106200 [exp]	4.24	0.6538
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.003G069900 [exp]	10.48	0.6582	SEC22.2
AT5G17070			unknown protein		Potri.019G052400 [exp]	10.77	0.6575
AT1G11880			transferases, transferring hex...		Potri.003G216900 [exp]	10.81	0.6061
AT3G17300		EMB2786	unknown protein		Potri.010G152100 [exp]	12.24	0.6352
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	21.77	0.6342	Pt-RPT2.2
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	22.24	0.6242
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	29.24	0.5367	SNF4.4
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.015G012200 [exp]	35.49	0.6017
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.001G371700 [exp]	43.90	0.6317	CBL2.2

Compare expression of checked genes

Potri.010G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.