Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HY5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17609 133 / 8e-40 bZIP HYH HY5-homolog (.1.2.3.4) AT5G11260 97 / 3e-25 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G40950 49 / 1e-06 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 45 / 2e-05 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT1G03970 42 / 0.0001 bZIP GBF4 G-box binding factor 4 (.1) AT5G44080 41 / 0.0004 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 40 / 0.0005 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G34000 40 / 0.0006 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G029500 [exp] 102 / 3e-27 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 102 / 3e-27 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G034500 [exp] 50 / 6e-07 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.016G032400 [exp] 44 / 4e-05 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 40 / 0.0008 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G192900 [exp] 40 / 0.0009 AT5G44080 142 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002900 [exp] 101 / 8e-27 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 98 / 2e-25 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10038995 [exp] 54 / 4e-08 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 54 / 4e-08 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 50 / 6e-07 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 50 / 7e-07 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10040069 [exp] 43 / 9e-05 AT1G42990 84 / 4e-18 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Lus10002399 [exp] 42 / 0.0002 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 42 / 0.0003 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10028575 [exp] 41 / 0.0003 AT5G44080 191 / 2e-59 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.010G004200.1 pacid=42799476 polypeptide=Potri.010G004200.1.p locus=Potri.010G004200 ID=Potri.010G004200.1.v4.1 annot-version=v4.1 ATGGATATTGGTGAATCCAACAACAAGTACCCTCATGATCATAAGAAGCAATTACTTGATGACGATGACGACGACGACGACGACGACGACGACCATCAGG TGGAGGGCACTAGTGCTACCGCTACCTCTTCGTCTTCCTCTTCTTGGAGGATCAGGAGAAGTACTGGTAGTACAAGTGACAATCTCATTTCACACCACAA AAACAAATTAGTAGATCATGAAGACAGTGATGAAGATCTTTTCACGGTTCCGGATGTAGAAGCTCGACCACCAGCGGAGGCTGCTGCTGCTGCTGCTGGT AATAATACTACTACTTACAATAATAAGAACATTAATTCTAATAATCCAGAGGTTCAATCCGCCGCAGCAGCACCAGCTGCAACAGGGAGTAATAAACGCC ATAGAGGACGAAACCCTGTTGACAAAGAATATAGAAGGCTCAAGAGCAGATTGCTAAGGAACAGGGTCTCAGCCCAACAAGCTCGAGAAAGAAAGAAGGT TTACGTCAATGACTTGGAATCAAGAGCCAAAGAATTGCAGGAAATTAATACCAAATTAGAGGAGAAGATCTCCACATTGACCAATGAAAACACCATGCTT CGGAAGGTCCTCATGAATACCAGGCCTAAGGTTGATGAAAGCATGGAGCAAAAGCAGTAA
AA sequence Show only first row Show all	>Potri.010G004200.1 pacid=42799476 polypeptide=Potri.010G004200.1.p locus=Potri.010G004200 ID=Potri.010G004200.1.v4.1 annot-version=v4.1 MDIGESNNKYPHDHKKQLLDDDDDDDDDDDDHQVEGTSATATSSSSSSWRIRRSTGSTSDNLISHHKNKLVDHEDSDEDLFTVPDVEARPPAEAAAAAAG NNTTTYNNKNINSNNPEVQSAAAAPAATGSNKRHRGRNPVDKEYRRLKSRLLRNRVSAQQARERKKVYVNDLESRAKELQEINTKLEEKISTLTNENTML RKVLMNTRPKVDESMEQKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	0	1	HY5.1
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	1.73	0.9610	PGR5.2
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011400 [exp]	3.87	0.9547
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007400 [exp]	3.87	0.9583
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	4.69	0.9600
AT1G18180			Protein of unknown function (D...		Potri.015G039900 [exp]	5.09	0.9419
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	5.83	0.9367
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	7.21	0.9576
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135300 [exp]	7.34	0.9510
AT5G19590			Protein of unknown function, D...		Potri.006G158952 [exp]	7.74	0.9216
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	8.00	0.9469

Compare expression of checked genes

Potri.010G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.