Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57560 248 / 2e-80 MYB ATMYB50 myb domain protein 50 (.1) AT1G09540 247 / 2e-79 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 234 / 7e-76 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G26660 231 / 2e-73 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G12720 199 / 1e-61 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G13890 199 / 5e-61 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT2G16720 193 / 1e-59 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT3G61250 192 / 4e-59 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G10280 194 / 5e-59 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G15310 193 / 6e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G001000 [exp] 285 / 4e-93 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 281 / 9e-92 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.002G185900 [exp] 275 / 8e-89 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 275 / 8e-89 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.012G084100 [exp] 243 / 8e-78 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 239 / 3e-76 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.003G155700 [exp] 206 / 9e-64 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.001G197000 [exp] 203 / 3e-62 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.008G081600 [exp] 201 / 5e-62 AT3G12720 262 / 2e-86 myb domain protein 67 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038022 [exp] 241 / 5e-76 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 200 / 6e-61 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10014784 [exp] 193 / 2e-59 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 193 / 3e-59 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10038395 [exp] 193 / 4e-59 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 192 / 6e-59 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10018418 [exp] 193 / 1e-58 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10016948 [exp] 190 / 3e-58 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10027197 [exp] 188 / 4e-58 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10001548 [exp] 189 / 7e-58 AT4G09460 291 / 2e-99 myb domain protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G004300.1 pacid=42796952 polypeptide=Potri.010G004300.1.p locus=Potri.010G004300 ID=Potri.010G004300.1.v4.1 annot-version=v4.1 ATGGGGAGGCAATCTTGCGGTTACAAGCAGAAACTAAGAAAAGGGTTGTGGTCCCCGGACGAAGATGAGAAGCTTTTGAGGTACATTACCGAGCATGGAC ATGGATGCTGGAGCTCCGTCCCCAAGCTTGCAGGTCTTGAAAGGTGCGGAAAGAGTTGCAGGCTGAGGTGGATCAATTACTTAAGACCAGACTTGAAGAG AACCAGATTCTCAAGCCAGGAAGAGAACCTCGTAATCCAACTTCAGTCAGTTCTAGGCAACAGGTGGTCTCGAATTGCAGCACAGTTACCAGGAAGAACG GACAATGAGATAAAGAATCTATGGAACTCTTCCATTAAGAAGAAACTCATGCAGAAAGGTATTGACCCCAACACCCACAAGCCACTCTCTGAGGTTAAGC TTTCTACTAGCAAGTGCCCTGAGAAGGCCTCAAGAGAACTGGATACAGCGATCTCACTCAATCTCAAGGCAGATAGTTCAAAGCCATCACTCATTGATGT ATCGAGCTGTAAGATTGAAAAAGGAGATGACAATTTGAATGCCTCCAAAACCAGTGCCCACCAGGAATTCTTCCCAGACAAGTCTTTGCCATTCAATCGA TACCCCAACATCCAGCACAGCCCTTTAGATTCAATTGCTTACCTGCAATTCCCAGTCCAGCAGTTGAATCATGAGCAATTAGAGCTTGACCAGAAGTGCA GTCTTTTTGAGCCAAACCAAGAACTCAACTCCAGAACACTAGTACCCACGATTTCAAGGTCAATCTTATCTGCTCAAATGGACAATAAAATCCATGCAGG TCTTCCCTTTCACTCAATGGGCACATTCAATAACATCCATTGGGATTCAAGTAATTGCAGCAGCGAAAGTAGTGAGTTTCAGAAGAAGTCCTTATTCGAT AGCAACGTCTTCTCATGGGGGTTGGCAGATGATGGTGGATCATCAGACAAGACCTTACAACTCCATTCCGCTGATGCTGAGACAACAGATATCAAGTGGT CGGAATATCACAACACATCATTTCTAGCCGAACACAATCAACAGACACTACACTCGTGA
AA sequence Show only first row Show all	>Potri.010G004300.1 pacid=42796952 polypeptide=Potri.010G004300.1.p locus=Potri.010G004300 ID=Potri.010G004300.1.v4.1 annot-version=v4.1 MGRQSCGYKQKLRKGLWSPDEDEKLLRYITEHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRTRFSSQEENLVIQLQSVLGNRWSRIAAQLPGRT DNEIKNLWNSSIKKKLMQKGIDPNTHKPLSEVKLSTSKCPEKASRELDTAISLNLKADSSKPSLIDVSSCKIEKGDDNLNASKTSAHQEFFPDKSLPFNR YPNIQHSPLDSIAYLQFPVQQLNHEQLELDQKCSLFEPNQELNSRTLVPTISRSILSAQMDNKIHAGLPFHSMGTFNNIHWDSSNCSSESSEFQKKSLFD SNVFSWGLADDGGSSDKTLQLHSADAETTDIKWSEYHNTSFLAEHNQQTLHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.010G004300 [exp]	0	1
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.006G152700 [exp]	3.16	0.8169
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.012G039400 [exp]	6.00	0.8046	MYB.41
AT5G51670			Protein of unknown function (D...		Potri.012G129900 [exp]	6.32	0.8013
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	9.79	0.7549
AT3G22790			Kinase interacting (KIP1-like)...		Potri.010G083300 [exp]	13.22	0.8005
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156600 [exp]	14.56	0.7070
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	14.62	0.8068
					Potri.012G034400 [exp]	18.97	0.7626
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	20.14	0.7710
AT5G26720			unknown protein		Potri.005G001100 [exp]	21.35	0.6986

Compare expression of checked genes

Potri.010G004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.