Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26670 560 / 0 Pectinacetylesterase family protein (.1.2) AT1G57590 558 / 0 Pectinacetylesterase family protein (.1) AT3G05910 552 / 0 Pectinacetylesterase family protein (.1.2) AT3G62060 538 / 0 Pectinacetylesterase family protein (.1) AT2G46930 536 / 0 Pectinacetylesterase family protein (.1) AT1G09550 453 / 1e-158 Pectinacetylesterase family protein (.1) AT4G19420 437 / 2e-152 Pectinacetylesterase family protein (.1.2) AT5G23870 429 / 9e-149 Pectinacetylesterase family protein (.1.2.3) AT3G09410 417 / 8e-144 Pectinacetylesterase family protein (.1.3) AT4G19410 389 / 2e-133 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000900 [exp] 584 / 0 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 575 / 0 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 557 / 0 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.006G084900 [exp] 436 / 2e-151 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 430 / 2e-149 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 422 / 1e-146 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G234100 [exp] 413 / 2e-142 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 403 / 7e-139 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 385 / 8e-132 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038024 [exp] 558 / 0 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 555 / 0 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 531 / 0 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10010084 [exp] 441 / 7e-154 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 431 / 1e-149 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 429 / 1e-148 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 421 / 6e-146 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10035682 [exp] 410 / 2e-141 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 407 / 3e-140 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 399 / 1e-136 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.010G004400.2 pacid=42797529 polypeptide=Potri.010G004400.2.p locus=Potri.010G004400 ID=Potri.010G004400.2.v4.1 annot-version=v4.1 ATGATGACGTTGTACTTGTGGTTGGGATTTATGTATGGGTTAATGATGTGCTCTTTAACATGGAAATGTGTAAACTGTTTTGAATTCGAACACTCTCAGC CTCTGCCTCTCCAAGATTGGAATAATAATGTCACTTATAAAGCAGCAGCAGAAGCATTTGCATATGCATATGCTCGTCGCACACCACCGTTAATGGTGGG TCTTACACTTGTTAATGCAGCTGCTTCAAAGGGAGCTGTCTGCCTGGACGGCTCATTACCAGGGTACCACATCCACAGAGGATATGGATCAGGCGCAAAC AGTTGGCTCGTTCAATTGGAGGGCGGAGGATGGTGTAATTCAATCAGAAAATGTGTTTTTAGTAAGAAAACACGCCATGGTTCTTCACATTATATGGAAA AGCAGATACCTTTTGAAGGCATACTCAGCAACAAAGCTGAAGAAAATCCTGATTTTTATAATTGGAACAGGGTCAAGGTTCGTTATTGTGATGGTGGATC TTTCAGTGGAGACAGTCAAAATGAGGCAGCACAACTCTATTTTAGAGGACAAAGAATCTGGTCAGTTGTCATGGAAGATTTGATGTCGAAAGGAATGCGC TATGCTAATCAGGCTCTTCTGTCTGGATGTTCAGCTGGGGGTTTAGCATCTATACTACATTGCGACGAATTCCGGCATTTATTTCCAAGAACTGCTAGAG TCAAGTGCCTCAGTGATGCTGGTTTATTCCTTGACGTACCTGACATCTCTGGTTGGCGCACGTTAAGATATATGTTTGCAGGAGTGGTCACGCTGCAGGG GATGCAAAAGAACCTGCCCCAGGGTTGTACTAAACGCTTCAATCCAATCATGTGCTTTTTCCCTCAGCGATCAATTGCTAGCGTCAGGACTCCACTTTTT CTTGTCAATACAGCTTATGATACATGGCAGATCCAGGTCAGTTTAGCTCCTGCCTCAGCTGATCATCATGGAAACTGGAATGGATGCAGAAAAAACTATG CACGCTGCACTGGATCACAAATTAGTTTTCTTCAAGGTTTCAGAAATCAAATGCTCTATGCTGTAAGAGGCTTCTCAAGGTTGAAGAAAAATGGATTGTT TATAAATTCATGTTTTGCTCATTGCCAGACAGAGAGACAGGACACATGGTTTTCTCCAGGTTCTCCCCACATTAAAAGCAAGGGGATAGCGGAGTCTGTT GGCAACTGGTATTTTGATCGTGCTGTTATTATGGCTATTGACTGTCCGTACCCTTGTGACCATACCTGCCACCACCTGGTGTTCAAGTGA
AA sequence Show only first row Show all	>Potri.010G004400.2 pacid=42797529 polypeptide=Potri.010G004400.2.p locus=Potri.010G004400 ID=Potri.010G004400.2.v4.1 annot-version=v4.1 MMTLYLWLGFMYGLMMCSLTWKCVNCFEFEHSQPLPLQDWNNNVTYKAAAEAFAYAYARRTPPLMVGLTLVNAAASKGAVCLDGSLPGYHIHRGYGSGAN SWLVQLEGGGWCNSIRKCVFSKKTRHGSSHYMEKQIPFEGILSNKAEENPDFYNWNRVKVRYCDGGSFSGDSQNEAAQLYFRGQRIWSVVMEDLMSKGMR YANQALLSGCSAGGLASILHCDEFRHLFPRTARVKCLSDAGLFLDVPDISGWRTLRYMFAGVVTLQGMQKNLPQGCTKRFNPIMCFFPQRSIASVRTPLF LVNTAYDTWQIQVSLAPASADHHGNWNGCRKNYARCTGSQISFLQGFRNQMLYAVRGFSRLKKNGLFINSCFAHCQTERQDTWFSPGSPHIKSKGIAESV GNWYFDRAVIMAIDCPYPCDHTCHHLVFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	3.46	0.7996	Pt-NPGR2.1
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	6.24	0.8198
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.010G081500 [exp]	7.07	0.7567	Pt-DMC1.2
AT1G47740			PPPDE putative thiol peptidase...		Potri.004G151200 [exp]	16.24	0.7604
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	17.34	0.7635
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	18.43	0.7899
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.004G005301 [exp]	25.45	0.7038
AT4G05520		ATEHD2	EPS15 homology domain 2 (.1.2)		Potri.011G022300 [exp]	26.45	0.7855
AT2G34060			Peroxidase superfamily protein...		Potri.004G052100 [exp]	29.73	0.7467
AT4G22860			Cell cycle regulated microtubu...		Potri.012G130300 [exp]	31.81	0.7565

Compare expression of checked genes

Potri.010G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.