Plant FIBer expression Database

Potri.010G004600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17611 351 / 5e-121 ATRBL14 RHOMBOID-like protein 14 (.1.2.3)
AT3G58460 57 / 5e-09 ATRBL15 RHOMBOID-like protein 15 (.1.2)
AT5G10630 41 / 0.0008 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G197900
[exp]
49 / 2e-06 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032095
[exp]
316 / 3e-107 AT3G17611 339 / 2e-116 RHOMBOID-like protein 14 (.1.2.3)
Lus10014591
[exp]
258 / 3e-78 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10021092
[exp]
48 / 1e-05 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2)
Lus10017221
[exp]
46 / 4e-05 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF00641 zf-RanBP Zn-finger in Ran binding protein and others
CL0207 Rhomboid-like PF01694 Rhomboid Rhomboid family
Representative CDS sequence
>Potri.010G004600.1 pacid=42797908 polypeptide=Potri.010G004600.1.p locus=Potri.010G004600 ID=Potri.010G004600.1.v4.1 annot-version=v4.1
ATGGATAGAAGAGGAAGCTTAACAAAGGGAATGTTGCCGCTGCTGGCAATTCACGCTGTAAGCGAGTACTATAGGCTGCCATGGAAACCTCCTGTCACCG
CGGCTCTTCTCGGTGCCAATACTCTCATCTATTTGAGGCCTGCTTTTCTCCGTCATATCCTTCCCTCTATCGATCAAGTCTGGTTTAATCCCCACCTCAT
TCTTAAGTATAGGGACCTGAAACGCTTCCTGCTCTCACCATTCTATCATGTGAGTGACTCTCATCTCGTTTACAACATGATGTCGCTCTTATGGAAGGGA
ATTCAATTGGAAACTTCTGTGGGAAGTGTTGAATTTGCATCTATGCTTGCTGCTTTACTTGCTATGTCCCAGGGTATTACACTTTTGCTAGCCAGGTCCC
TCCTCCTCTTCTTTGATTATGACAAACCTTTCTACTCTGAATATTCTGCTGGATTTTCTGGTGTTCTCTTTGCCATGAAAGTTGTCCTCAATTCTCAGTC
CGAGAGTCTTACTAATGTCTATGGATTGGTCATACCGGCACGCCATGCTGCATGGGCAGAGTTGATTCTTATCCAAATGTTTGTACCTGGCGTCTCATTT
CTTGGCCACCTCGGTGGAATACTTGCTGGGATTCTCTATGTCAAGTTGAAGAGAGCGTATTCAGGTCCAGACCCACTCACTCTAACCATCAGAACCCTTA
CCAATGTAATAAGCTGGCCTCTGAGGTTTGTGAGGAATTTATTTCAATTCCGGCGAGGACGGATTTCTGGTCGTGGAAGTGTTGGTGGGAGGCAGACGGG
AAGGGCAATGTCAGGGCTGTGGAGATGCCAAGCATGTACATATGATAATTCCAGTCTGTTAAGTGTATGTGAGATGTGTGGGACAAGTCGGGGTGCTCGT
GGATTGTCCTCCCGTGAATTTTCACGCCATTCCGATGACCTTACATTGGAAGAAATACGTCTTCGAAGGATCGAAAGATTTGGTTGA
AA sequence
>Potri.010G004600.1 pacid=42797908 polypeptide=Potri.010G004600.1.p locus=Potri.010G004600 ID=Potri.010G004600.1.v4.1 annot-version=v4.1
MDRRGSLTKGMLPLLAIHAVSEYYRLPWKPPVTAALLGANTLIYLRPAFLRHILPSIDQVWFNPHLILKYRDLKRFLLSPFYHVSDSHLVYNMMSLLWKG
IQLETSVGSVEFASMLAALLAMSQGITLLLARSLLLFFDYDKPFYSEYSAGFSGVLFAMKVVLNSQSESLTNVYGLVIPARHAAWAELILIQMFVPGVSF
LGHLGGILAGILYVKLKRAYSGPDPLTLTIRTLTNVISWPLRFVRNLFQFRRGRISGRGSVGGRQTGRAMSGLWRCQACTYDNSSLLSVCEMCGTSRGAR
GLSSREFSRHSDDLTLEEIRLRRIERFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17611 ATRBL14 RHOMBOID-like protein 14 (.1.2... Potri.010G004600
[exp]
0 1
AT3G56830 Protein of unknown function (D... Potri.002G146000
[exp]
2.00 0.9114
AT3G03750 SUVR3, SDG20 SET domain protein 20 (.1.2) Potri.013G064600
[exp]
2.44 0.8846 SDG935
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Potri.014G151200
[exp]
3.87 0.8964 TXR1.1
AT3G44110 ATJ3 DNAJ homologue 3 (.1.2) Potri.009G015700
[exp]
4.12 0.9323 Pt-PM37.1
AT2G25140 HSP98.7, CLPB-M... HEAT SHOCK PROTEIN 98.7, CASEI... Potri.006G262700
[exp]
5.19 0.9104
AT3G28970 AAR3 antiauxin-resistant 3, Domain ... Potri.004G122100
[exp]
6.16 0.8335
AT1G28200 FIP1 FH interacting protein 1 (.1) Potri.005G159100
[exp]
6.48 0.8482
AT3G12040 DNA-3-methyladenine glycosylas... Potri.016G060000
[exp]
7.93 0.8783
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Potri.002G212400
[exp]
9.16 0.8301
AT5G49220 Protein of unknown function (D... Potri.008G213300
[exp]
15.29 0.8439

Potri.010G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.