Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06980 635 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT4G09730 178 / 3e-48 RH39 RH39 (.1) AT3G61240 128 / 1e-31 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G55150 127 / 3e-31 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 126 / 2e-30 DEAD box RNA helicase family protein (.1.2) AT4G00660 125 / 2e-30 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 123 / 1e-29 DEA(D/H)-box RNA helicase family protein (.1) AT1G31970 122 / 2e-29 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 120 / 1e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 120 / 2e-28 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198300 [exp] 169 / 8e-45 AT4G09730 743 / 0.0 RH39 (.1) Potri.013G158000 [exp] 145 / 3e-37 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 140 / 3e-35 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G098800 [exp] 126 / 1e-30 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.002G157500 [exp] 124 / 5e-30 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 123 / 9e-30 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.003G038300 [exp] 122 / 1e-29 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G000100 [exp] 122 / 6e-29 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.017G071400 [exp] 120 / 3e-28 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039091 [exp] 637 / 0 AT3G06980 654 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10038771 [exp] 628 / 0 AT3G06980 645 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10017781 [exp] 173 / 4e-46 AT4G09730 732 / 0.0 RH39 (.1) Lus10011780 [exp] 127 / 2e-31 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2) Lus10032133 [exp] 128 / 7e-31 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10037646 [exp] 127 / 7e-31 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032135 [exp] 128 / 8e-31 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10015627 [exp] 126 / 9e-31 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030075 [exp] 126 / 2e-30 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017804 [exp] 123 / 1e-29 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G004700.2 pacid=42799410 polypeptide=Potri.010G004700.2.p locus=Potri.010G004700 ID=Potri.010G004700.2.v4.1 annot-version=v4.1 ATGGCACATCCTCTTCTTGTAAGCTTGAGACCCCAAAGCATTATCATCGCCTATCACAGCCACAGCCACAGCCACAGCCACAGCCACATTGAATTGAAAT TGAATAGTAGCAGTCCTAGGGTTTTGTCTTTGGTTAGAGCTGTCCCTCACCTTCAAGCCTCTGCTTCTCACTCTCACCTTCTCGATGATCTTCATCACAC TCCTTCTCCTCCTTCTCCTCCTTCAAATAAGGATGATTCAGGTATTGAAACTAAGGGAGTAGCTGCAAATTTTGGGAAACTAAAAGCACACAAGTTAAAA CTTATTGCCAGAAAGGCAAAGCAACAATTCAACAAACACCAACATTTTCGAGAAGAGGAGGAGGAGGCAGATAAAGAGCCCATCAGTAGGAATTCAGACG AGCGTGGTGTTAATAGGACATCAAGGCATGATATCAAACCTCGAAAATCCGATTCCAAAGTGGCTGGAACACATATTTCTTCTTCCCACTCAAGAGGTTG GGGTAAAGGAGTCGACTCCAGATCAATGCAGGTTTCTATGCAACGAGGATATGAGAATGACTTCTTTAGTAGAAAATCATTTAGAGACCTGGGATGCACT GACTTTATGATTGAGTCTTTAAAAGGGCAGGTTTTTGTGCGCCCTTCTCATATTCAGGCCATGGCATTTGCACCTGTAATTGACGGGAAGAGCTGTATTA TAGCAGACCAAAGTGGATCAGGGAAGACAATGGCATATCTCATACCTTTAATTCAACGTCTGAGGCAAGAAGAACTCCAAGGACTTGGTCAATCCTCATC TCAAAGTCCTCGAGTACTTATATTGGTGCCAACTGCTGAGTTGGCATCACAGGTTTTGAACAATTGCAGATCGATGTCAAAACACGGGGTTCCATTTCGG TCTATGGTTGTGACAGGTGGATTTCGACAGAGGACACAACTGGAAAATCTAGAACAAGGCGTTGATGTTCTAATAGCAACCCCTGGTCGTTTCATGTTCC TAATCAAAGAAGGCTTCTTGAAATTACAGAATCTTAAATGTGCTGTGCTAGATGAGATAGATATACTGTTCAATGACGAGAATTTTGAGGCTTCCCTGCA AGGCTTGATCAATTCTTCTCCTGTTACCACACAATATCTGTTTGTGACTGCAACTTTACCTGTAGATGTATGCAATAAACTCATTGAAGTCTTTCCTGAT TGTGAAGTCATCATGGGACCTGGTGTGCATCGTACAAGTGCCAGGCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAATTGAGGCAGAAAAAACTCCTG AGACAGCATTTCTCAATAAGAAATCTGCTCTTCTGCAGCTGGTGGAGCAAAGTCCAGTTTCGAAAACAATTATTTTCTGTAATAAGATTGAGACTTGCAG AAAGGTAGAGAATGCATTAAAACGTACTGATAGAAAAGGGACTCTTGTTCGAGTTCTACCATTCCATGCTGCTCTGGCACAAGAATCACGTCTCGCAAAT ATGAAGGAGTTCATGAATCCTTCTCGGCCCAAAGAAGAGTCTCTCTTTTTGGTTTGCACTGATAGAGCATCGCGGGGAATTGACTTTTCTGGTGTGGATC ATGTGGTACTCTTTGACTTTCCACGTGATCCAAGTGAATATGTGCGCCGTGTTGGAAGGACTGCCAGGGGTGCCAGAGGAAACGGGAAAGCTTTTATCTT TGCTGTTGGGAAGCAAGTTTTTCTTGCACGAAAGATAATACAGAGAAATGAAAAAGGTCACCCGTTGCATGATGTGCCATTTGCGTATGAGCAGGTGGGT TAA
AA sequence Show only first row Show all	>Potri.010G004700.2 pacid=42799410 polypeptide=Potri.010G004700.2.p locus=Potri.010G004700 ID=Potri.010G004700.2.v4.1 annot-version=v4.1 MAHPLLVSLRPQSIIIAYHSHSHSHSHSHIELKLNSSSPRVLSLVRAVPHLQASASHSHLLDDLHHTPSPPSPPSNKDDSGIETKGVAANFGKLKAHKLK LIARKAKQQFNKHQHFREEEEEADKEPISRNSDERGVNRTSRHDIKPRKSDSKVAGTHISSSHSRGWGKGVDSRSMQVSMQRGYENDFFSRKSFRDLGCT DFMIESLKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTMAYLIPLIQRLRQEELQGLGQSSSQSPRVLILVPTAELASQVLNNCRSMSKHGVPFR SMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLKLQNLKCAVLDEIDILFNDENFEASLQGLINSSPVTTQYLFVTATLPVDVCNKLIEVFPD CEVIMGPGVHRTSARLEEILVDCSGEIEAEKTPETAFLNKKSALLQLVEQSPVSKTIIFCNKIETCRKVENALKRTDRKGTLVRVLPFHAALAQESRLAN MKEFMNPSRPKEESLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGNGKAFIFAVGKQVFLARKIIQRNEKGHPLHDVPFAYEQVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06980			DEA(D/H)-box RNA helicase fami...		Potri.010G004700 [exp]	0	1
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.010G051900 [exp]	2.64	0.9671
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	3.74	0.9726	Pt-HCF101.1
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	4.00	0.9700
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	4.24	0.9703
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.010G189800 [exp]	4.89	0.9697
AT3G02690			nodulin MtN21 /EamA-like trans...		Potri.012G145300 [exp]	6.92	0.9656
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	7.34	0.9633	Pt-CLPC.2
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	8.36	0.9699
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	8.48	0.9700
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	9.16	0.9604	NADK2.2

Compare expression of checked genes

Potri.010G004700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.