Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48350 229 / 4e-78 EMB3105 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) AT1G14205 71 / 8e-16 Ribosomal L18p/L5e family protein (.1) AT3G17626 62 / 2e-13 structural constituent of ribosome (.1) AT5G27820 42 / 2e-05 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087100 [exp] 75 / 3e-17 AT1G14205 202 / 2e-67 Ribosomal L18p/L5e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038770 [exp] 237 / 3e-81 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Lus10039092 [exp] 236 / 1e-80 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Lus10030465 [exp] 75 / 1e-17 AT1G14205 174 / 2e-56 Ribosomal L18p/L5e family protein (.1) Lus10012820 [exp] 74 / 1e-16 AT1G14205 182 / 2e-59 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [poplar] [flax] S11_L18p PF00861 [poplar] [flax] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Potri.010G005000.3 pacid=42797360 polypeptide=Potri.010G005000.3.p locus=Potri.010G005000 ID=Potri.010G005000.3.v4.1 annot-version=v4.1 ATGGGGAGCAGCGGTACTTGTTCTCTTTGGAGTGGGTTCTTAGGCAGTGGGGGGCAGCAGCTCCGGGCATCGGTGGCAGCAGCCAAGCAGAGGACAAGCC CAAGTCTAAGCTTTGTAACAGTTGAAGCCAAAGCCAAAACTAGACGCGAAGACAGGACTGCTCGCCATATTCGTATCAGAAAGAAGGTGGAAGGGACTCC AGATAGGCCTAGATTGTGTGTCTTCCGTTCCAACAAGCATCTCTACGTCCAAGTGATTGATGATACAAAGATGCACACGCTCGCTTCCGCTTCAACCATG CAGAAGCCCTTCGCTCAGGACTTTGATTACTCTTCTGGTCCAACCATTGATGTAGCTAAGAAGGTAGGTGAAGTCATTGCAAAATCTTGTTTAGAGAAGG GGATAACTAAGGTGGCTTTTGACAGAGGTGGGTACCCTTATCATGGGCGTGTAGCAGCCCTTGCAGATGCAGCTCGGGAAAATGGCCTTCAATTCTAG
AA sequence Show only first row Show all	>Potri.010G005000.3 pacid=42797360 polypeptide=Potri.010G005000.3.p locus=Potri.010G005000 ID=Potri.010G005000.3.v4.1 annot-version=v4.1 MGSSGTCSLWSGFLGSGGQQLRASVAAAKQRTSPSLSFVTVEAKAKTRREDRTARHIRIRKKVEGTPDRPRLCVFRSNKHLYVQVIDDTKMHTLASASTM QKPFAQDFDYSSGPTIDVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVAALADAARENGLQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Potri.010G005000 [exp]	0	1
AT5G42765			unknown protein		Potri.014G196800 [exp]	1.41	0.9815
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.014G066700 [exp]	6.48	0.9592	Pt-AFO.1
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	6.63	0.9632
AT1G50320		ATHX, ATX	thioredoxin X (.1)		Potri.007G074000 [exp]	9.48	0.9616
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	10.24	0.9632
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	10.58	0.9544
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	13.56	0.9587
AT1G18810			phytochrome kinase substrate-r...		Potri.015G062600 [exp]	14.49	0.9476
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.012G106000 [exp]	15.00	0.9198	ICE1.2
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	16.58	0.9573	Pt-ALDH11.1

Compare expression of checked genes

Potri.010G005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.