Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17630 1101 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 961 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 912 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 781 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 701 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G13620 690 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 414 / 6e-132 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 392 / 1e-123 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 331 / 6e-101 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G37060 302 / 6e-90 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004800 [exp] 1562 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G134900 [exp] 996 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 981 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 979 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.006G054700 [exp] 711 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 711 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 460 / 1e-149 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 441 / 2e-142 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.019G123700 [exp] 389 / 6e-123 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 956 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 870 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017541 [exp] 716 / 0 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10035312 [exp] 711 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 711 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 643 / 0 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10028748 [exp] 493 / 9e-168 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10024717 [exp] 483 / 7e-163 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10040881 [exp] 452 / 2e-146 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 442 / 1e-142 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.010G005200.1 pacid=42799976 polypeptide=Potri.010G005200.1.p locus=Potri.010G005200 ID=Potri.010G005200.1.v4.1 annot-version=v4.1 ATGGCCGCCAACACAAGTAATGTAACAGCTGCATTGCCAAAGCCTATGAAGGCAACGTCAAATGGAGCGTTTCAGCATGAGAATCCATTAGATTATGCGC TTCCTTTGTTGATCCTTCAGATATGTTTGGTCGTCGCTTTTACAAGGACCCTTGCATTCCTTCTCAAGCCCCTCAGGCAACCCAGAGTCATTGCTGAGAT CATTGGAGGAATACTGCTTGGACCATCTGCGTTGGGAAGAAGCGAGAGATTTCTTCACACGGTGTTCCCACCAAAGAGCATGACTGTCCTGGACACGGTC GCCAACATCGGTCTCCTTTTCTTCTTGTTTTTGGTGGGTTTAGAGCTTGACATTCGATCCATTCGTCGCACTGGAAAGAAGTCCTTGGCAATAGCCGGCG CTGGCATCACCCTTCCTTTCCTTTTAGGAATCGGCACCTCATTTGTTCTTCGTTCCACCATATCCAAAGGAAGCGCTCACGCCCCTTTCCTTGTCTTCAT GGGCGTCTCTCTCTCCATCACCGCTTTCCCAGTCCTGGCCCGTATCTTGGCGGAACTCAAGCTTCTAACCACCGATGTAGGCCGCATAGCAATGTCTGCA GCTGCAGTCAATGATGTTGTTGCCTGGATTCTCCTTGCACTTGCTATAGCTCTCTCAGGCAGCAACACTTCTCCGCTTATCTCCTTATGGGTCCTCCTTT GTGGCGTGGGGTTTGTTGTGTTTTCCGTTTATGTCATAAGACCATTACTGGAGCTTATGGCCCGGCGCAGCCCTGATGGCGAGCCGGTGAAAGAGATCTA CATTTGCATCACGTTGTCACTTGTGTTGGCTTCCTCTTTCGTCACCGACTCCATCGGCATACATGCACTTTTTGGAGCTTTTGTGGTCGGAATTTTAGTA CCCAAGGACAGTCCTTTTCCCGGGGTTCTTATAGAGAAGATAGAGGATCTTGTGGCGGGGCTCTTTCTGCCACTCTATTTCGCATCCAGCGGGCTCAAGA CCAACGTTGCAACCATAAGTGGAGCACAATCTTGGGGCTTGCTTGTGCTCGTAATAGCCACGGCTTGTTTCGGTAAGATAATTGGGACAATGTTTGTGTC AAGGATGTTTTTTAAGGTGCCCTTTAGAGAAGCTGCGGCTCTTGGATTCCTAATGAACACCAAAGGCCTGGTGGAGCTCATTGTCCTCAATATTGGAAAG GATCGCAAGGTGCTCAATGATCAGACTTTTGCCGTTTTAGTTTTAATGGCGCTGTTCACCACCTTCATCACTACGCCAATCGTGATGGCCGTGTATAAGC CTGCTAGAAGGGTAGCGCCTTACAAGAACCGTACTGTCAAACGCAAGGATCTTGACACAGAGCTTCGACTACTGGCCTGCTTCCATAGCAGCCGCAATAT TCCTACTATGATCAACCTTGTGGAGTGTTCCCGAGGAACACGGAAGCGAGGACGCCTCTGCGTGTATGCCATGCATCTCATGGAACTTTCAGAGCGATCA TCTGCAATCTCAATGGTTCATAAAGCCCGAAAAAATGGACTCCCTTTTTGGAACAAGAAACGTGATGATAGAGATCAAATGGTGATTGCTTTTGAAGCTT ATCAGCAACTCAGCAGTGTCACCATCCGTCCCATGACTGCCATCTCTGCTCTCAACACTATCTATGAGGACATCTGCACCAGCGCACACCAAAAGCGTGC TGCCATGATTCTCCTCCCATTCCACAAGCACCAGAGAGTGGACGGAAGCTTGGAGTCTTTGGGGCACTCGCTGCAGGAGGTAAACCAGCGCGTCCTCCGT CATTCTCCATGTTCTGCTGGTATTCTCATTGACCGTGGATTCGGAGGCACCACCCAAGTCTCGGCCAGTGATGTGTCCTACAAGATTGCAGTCCCTTTCT TTGGAGGTAGTGACGACATGGAAGCTCTAGCCTACGGGATAAGAATGGCGGAGCACCCTGGAATCATGCTTACTGTCCTTAAGTTCGTGCCCGCATCAGG GAAGACGCTATTGACATTAGAAGGCCACGATACCAATGTGATCAGGGTTGAGAATGATAAAAATTCTAACAGCGAGGCTGATAGCGAGATCTTCTTCTCT GAATTCGTCCAGCTTGCTGCCAAAAAGCTGCAAGATTCAGTGACACATGAGGAAAGAGTGGTAGAGAGTAAGGCAGACGTTGTTGCAGCATTGAAATCAA TGAGCAAGAGCAATCTCTTCTTGGTAGGAAGAATGCCACCCATAGCTCCTCTGTTGATCTCAACCGACACTCCAGAACTGGGTCCTGTTGGAAGCTTTTT GGCATCCTCCAACTTCTCCAATACAGCATCAGTTTTGGTGATTCAACACTATAATCCAAATGTAAATCTTCATCCGCTCGTGGAGGAAAAAGAAAACGAA GACACGGATGATGGCACAGATACACCCGTTTTGGTTGAGAAATATTGA
AA sequence Show only first row Show all	>Potri.010G005200.1 pacid=42799976 polypeptide=Potri.010G005200.1.p locus=Potri.010G005200 ID=Potri.010G005200.1.v4.1 annot-version=v4.1 MAANTSNVTAALPKPMKATSNGAFQHENPLDYALPLLILQICLVVAFTRTLAFLLKPLRQPRVIAEIIGGILLGPSALGRSERFLHTVFPPKSMTVLDTV ANIGLLFFLFLVGLELDIRSIRRTGKKSLAIAGAGITLPFLLGIGTSFVLRSTISKGSAHAPFLVFMGVSLSITAFPVLARILAELKLLTTDVGRIAMSA AAVNDVVAWILLALAIALSGSNTSPLISLWVLLCGVGFVVFSVYVIRPLLELMARRSPDGEPVKEIYICITLSLVLASSFVTDSIGIHALFGAFVVGILV PKDSPFPGVLIEKIEDLVAGLFLPLYFASSGLKTNVATISGAQSWGLLVLVIATACFGKIIGTMFVSRMFFKVPFREAAALGFLMNTKGLVELIVLNIGK DRKVLNDQTFAVLVLMALFTTFITTPIVMAVYKPARRVAPYKNRTVKRKDLDTELRLLACFHSSRNIPTMINLVECSRGTRKRGRLCVYAMHLMELSERS SAISMVHKARKNGLPFWNKKRDDRDQMVIAFEAYQQLSSVTIRPMTAISALNTIYEDICTSAHQKRAAMILLPFHKHQRVDGSLESLGHSLQEVNQRVLR HSPCSAGILIDRGFGGTTQVSASDVSYKIAVPFFGGSDDMEALAYGIRMAEHPGIMLTVLKFVPASGKTLLTLEGHDTNVIRVENDKNSNSEADSEIFFS EFVQLAAKKLQDSVTHEERVVESKADVVAALKSMSKSNLFLVGRMPPIAPLLISTDTPELGPVGSFLASSNFSNTASVLVIQHYNPNVNLHPLVEEKENE DTDDGTDTPVLVEKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17630		ATCHX19	cation/H+ exchanger 19, cation...		Potri.010G005200 [exp]	0	1
AT3G17630		ATCHX19	cation/H+ exchanger 19, cation...		Potri.010G004800 [exp]	1.41	0.9569
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	7.48	0.8741
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	9.48	0.8800
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	15.29	0.8621
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	15.68	0.8881
					Potri.018G145600 [exp]	19.44	0.8719
AT2G30740			Protein kinase superfamily pro...		Potri.017G036501 [exp]	21.07	0.8379
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	21.21	0.8517
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	22.58	0.8683
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	22.71	0.8769

Compare expression of checked genes

Potri.010G005200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.